YRC Public Data Repository - Protein Structure Prediction

Protein:	aps2
Organism:	Schizosaccharomyces pombe
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aps2.

Description	E-value	Query Range	Subject Range
gi\|74007149 - gi\|74007149\|ref\|XP_854230.1\| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B subuni...	181.0	[0..2]	[143..190]
gi\|89042891 - gi\|89042891\|ref\|XP_944818.1\| PREDICTED: similar to adaptor-related protein complex 1 sigma 2 subunit...	170.0	[0..2]	[143..48]
gi\|109101341 - gi\|109101341\|ref\|XP_001098858.1\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3...	169.0	[0..1]	[143..75]
gi\|38109895, gi\|... - gi\|39951407\|ref\|XP_363420.1\| hypothetical protein MG01346.4 [Magnaporthe grisea 70-15], gb\|EAA55695....	169.0	[0..2]	[143..3]
gi\|76610718 - gi\|76610718\|ref\|XP_612669.2\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 iso...	167.0	[0..1]	[143..37]
gi\|57230864, gi\|... - gi\|58262560\|ref\|XP_568690.1\| vesicle-mediated transport-related protein [Cryptococcus neoformans var...	163.0	[0..1]	[143..73]
gi\|114600917 - gi\|114600917\|ref\|XP_001138231.1\| PREDICTED: similar to DC22, partial [Pan troglodytes]	161.0	[0..2]	[143..39]
gi\|11999126 - gi\|11999126\|gb\|AAG43051.1\|AF228054_1 clathrin-associated adaptor complex AP-1 small chain sigma1 [Dr...	160.0	[0..1]	[143..1]

Back

Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQFILIQNR HGKNRLSKYY VPFDDDEKVR LKARIHQLIS QRNQKFQANF LEWENSKLVY  60
   61 RRYAGLYFCF CVDSTDNDLA ILEMIHFFVE ILDSFFGNVC ELDLIFNFYK VSAILDEIIL 120
  121 GGEIGESNKK SVLERIEALE KLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.154902
Match:	1w63Q
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits