YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1A4.06c
Organism:	Schizosaccharomyces pombe
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1A4.06c.

Description	E-value	Query Range	Subject Range
gi\|83029715, gi\|... - gi\|83029715\|ref\|XP_897406.1\| PREDICTED: hypothetical protein LOC68971 isoform 1 [Mus musculus], gi\|8...	436.0	[0..61]	[382..13]
gi\|157821195, gi... - gi\|157821195\|ref\|NP_001102112.1\| hypothetical protein LOC362419 [Rattus norvegicus], gi\|149049709\|gb...	426.0	[0..61]	[382..13]
gi\|44890005 - gi\|44890005\|emb\|CAF32123.1\| hypothetical protein [Aspergillus fumigatus] gi\|159131534 - gi\|159131534\|gb\|EDP56647.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|66850415, gi\|... - gi\|70996050\|ref\|XP_752780.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668504...	423.0	[0..48]	[382..115]
gi\|67516869, gi\|... - gi\|67516869\|ref\|XP_658320.1\| hypothetical protein AN0716.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	422.0	[0..47]	[377..134]
gi\|119186627, gi... - gi\|90302706\|gb\|EAS32337.1\| hypothetical protein CIMG_03361 [Coccidioides immitis RS], gi\|119186627\|r...	419.0	[0..48]	[382..129]
gi\|83770496 - gi\|83770496\|dbj\|BAE60629.1\| unnamed protein product [Aspergillus oryzae] gi\|238489003, gi... - gi\|238489003\|ref\|XP_002375739.1\| hypothetical protein AFLA_017190 [Aspergillus flavus NRRL3357], gi\|... gi\|169763136 - gi\|169763136\|ref\|XP_001727468.1\| hypothetical protein [Aspergillus oryzae RIB40]	416.0	[0..48]	[382..104]
gi\|114585437 - gi\|114585437\|ref\|XP_001153179.1\| PREDICTED: similar to Chromosome 3 open reading frame 31 isoform 2 ...	414.0	[0..62]	[382..14]
gi\|39940662, gi\|... - gi\|39940662\|ref\|XP_359868.1\| hypothetical protein MGG_04909 [Magnaporthe grisea 70-15], gb\|EAA52217....	411.0	[0..48]	[382..109]
gi\|73984592 - gi\|73984592\|ref\|XP_533739.2\| PREDICTED: similar to Y71F9B.2 isoform 1 [Canis familiaris]	410.0	[0..60]	[382..12]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFGKTHFLS YNILRYSTKR WMNRHSYSHH AKCTVAQLLK QNLLTFENQR IQPEEELKEN  60
   61 LTKVVNYFQA PIDVAVGYGS GVFRQAGYSQ KENPMIDFIF QVEDPVKWHK INLQQNPSHY 120
  121 SFVKNFGPGF VSTLQESFGT GVYYNTHVEV EGNIIKYGVT SKKDVYEDLK NWNTMYLAGR 180
  181 FQKPVVILKG EDEFYKENSY NLSSALHVGL LMLADRFTEF DLYKTIVSLS YLG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [234-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIRMSFFAEN PRKVENIVSK QIAFFRKLYL PLLYAEPGVH FIESSEVLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [283-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMDPSDNSRY LSFHQNITKD SISRLLNGLP LNLVKILGLK PDTSSFEKCA ELMLTNQIST  60
   61 RSLLISKSIK KLTSFSILTQ SIKGIFTARC HSFRWYMSMR S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.822	a.188.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits