YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1450.13c
Organism:	Schizosaccharomyces pombe
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1450.13c.

Description	E-value	Query Range	Subject Range
gi\|125712854, gi... - gi\|67874097\|ref\|ZP_00504002.1\| Lumazine-binding protein [Clostridium thermocellum ATCC 27405], gi\|67... gi\|196251389, gi... - gi\|196251389\|ref\|ZP_03150059.1\| riboflavin synthase, alpha subunit [Clostridium thermocellum DSM 415...	289.0	[0..1]	[208..1]
gi\|6572099 - gi\|6572099\|emb\|CAB63083.1\| riboflavin synthase alpha chain [Bartonella bacilliformis] gi\|120614474, gi... - gi\|83751284\|ref\|ZP_00947698.1\| COG0307: Riboflavin synthase alpha chain [Bartonella bacilliformis KC...	289.0	[0..1]	[202..1]
gi\|70732822, gi\|... - gi\|70732822\|ref\|YP_262589.1\| riboflavin synthase subunit alpha [Pseudomonas fluorescens Pf-5], gi\|68...	288.0	[0..1]	[200..1]
gi\|11352486 - pir\|\|G83137 riboflavin synthase alpha chain PA4055 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|46164645, gi\|... - gi\|46164645\|ref\|ZP_00137498.2\| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa UCBP... gi\|126168875, gi... - gi\|84319134\|ref\|ZP_00967537.1\| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa C371... gi\|254242737, gi... - gi\|84325188\|ref\|ZP_00973228.1\| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa 2192... gi\|9950252, gi\|1... - gi\|9950252\|gb\|AAG07442.1\|AE004822_2 riboflavin synthase alpha chain [Pseudomonas aeruginosa PAO1], g... gi\|218769887, gi... - gi\|218889664\|ref\|YP_002438528.1\| riboflavin synthase subunit alpha [Pseudomonas aeruginosa LESB58], ...	288.0	[0..1]	[204..1]
gi\|107103569 - gi\|107103569\|ref\|ZP_01367487.1\| hypothetical protein PaerPA_01004639 [Pseudomonas aeruginosa PACS2]	288.0	[0..1]	[204..1]
gi\|150959794, gi... - gi\|94417009\|ref\|ZP_01296831.1\| hypothetical protein PaerP_01001205 [Pseudomonas aeruginosa PA7], gi\|...	288.0	[0..1]	[204..1]
gi\|49078224 - gi\|49078224\|gb\|AAT49763.1\| PA4055 [synthetic construct]	287.0	[0..1]	[204..1]
gi\|67157054, gi\|... - gi\|67157054\|ref\|ZP_00418416.1\| Lumazine-binding protein [Azotobacter vinelandii AvOP], gi\|67085731\|g... gi\|53611913 - ref\|ZP_00090948.2\| COG0307: Riboflavin synthase alpha chain [Azotobacter vinelandii]	286.0	[0..1]	[200..1]
gi\|126207867, gi... - gi\|126207867\|ref\|YP_001053092.1\| riboflavin synthase subunit alpha [Actinobacillus pleuropneumoniae ... gi\|32034736 - gi\|32034736\|ref\|ZP_00134867.1\| COG0307: Riboflavin synthase alpha chain [Actinobacillus pleuropneumo... gi\|165875944, gi... - gi\|165975843\|ref\|YP_001651436.1\| riboflavin synthase subunit alpha [Actinobacillus pleuropneumoniae ... gi\|190149676, gi... - gi\|190149676\|ref\|YP_001968201.1\| riboflavin synthase alpha chain [Actinobacillus pleuropneumoniae se...	285.0	[0..1]	[208..1]
gi\|48728929, gi\|... - gi\|77461239\|ref\|YP_350746.1\| riboflavin synthase subunit alpha [Pseudomonas fluorescens Pf0-1], gi\|7...	284.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTGLVEAIG VVKDVQGTID NGFAMKIEAP QILDDCHTGD SIAVNGTCLT VTDFDRYHFT  60
   61 VGIAPESLRL TNLGQCKAGD PVNLERAVLS STRMGGHFVQ GHVDTVAEIV EKKQDGEAID 120
  121 FTFRPRDPFV LKYIVYKGYI ALDGTSLTIT HVDDSTFSIM MISYTQSKVI MAKKNVGDLV 180
  181 NVEVDQIGKY TEKLVEAHIA DWIKKTQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.0
Match:	1kzlA
Description:	Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
riboflavin synthase activity	5.11500941509376	bayes_pls_golite062009
catalytic activity	2.05427820269334	bayes_pls_golite062009
transferase activity	0.708491789248912	bayes_pls_golite062009
binding	0.534066059984103	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: