YRC Public Data Repository - Protein Structure Prediction

Protein:	pgp1
Organism:	Schizosaccharomyces pombe
Length:	412 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgp1.

Description	E-value	Query Range	Subject Range
TSAD_PHOPR - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum (strain SS9) GN=tsaD PE=3... TSAD_PHOPR, GCP_... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum GN=tsaD PE=3 SV=1, Probab...	354.0	[0..39]	[401..1]
TSAD_HISS2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Histophilus somni (strain 2336) GN=tsaD PE=3 SV=1	353.0	[0..39]	[401..1]
gi\|90327169, gi\|... - gi\|90411911\|ref\|ZP_01219919.1\| putative O-sialoglycoprotein endopeptidase [Photobacterium profundum ...	353.0	[0..39]	[403..1]
TSAD_ECO81 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O81 (strain ED1a) GN=tsaD PE=3 SV... TSAD_ECO45 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ts... TSAD_ECOL6 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70092... TSAD_ECOUT - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=tsaD PE=... TSAD_ECOL5 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN... TSAD_ECOK1 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O1:K1 / APEC GN=tsaD PE=3 SV=1 GCP_ECOL6 - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Escherichia coli O6 GN=gcp PE=3... gi\|75240475 - gi\|75240475\|ref\|ZP_00724403.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|227835183, gi... - gi\|227887787\|ref\|ZP_04005592.1\| O-sialoglycoprotein endopeptidase [Escherichia coli 83972], gi\|22783... gi\|226899214, gi... - gi\|237706174\|ref\|ZP_04536655.1\| O-sialoglycoprotein endopeptidase [Escherichia sp. 3_2_53FAA], gi\|22...	352.0	[0..39]	[400..1]
TSAD_SALTY - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / AT... TSAD_SALG2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)... gi\|200387093, gi... - gi\|200387093\|ref\|ZP_03213705.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enteri... TSAD_SALDC - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella dublin (strain CT_02021853) GN=tsaD PE=... gi\|197265256, gi... - gi\|197265256\|ref\|ZP_03165330.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=gcp] [protein=O-sialoglycoprotein endopeptidase] [protein_id=YP_005239384.1] [location=complem... TSAD_SALEP - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=tsa... gi\|167990238, gi... - gi\|205331153\|gb\|EDZ17917.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s... GCP_SALTY - Probable O-sialoglycoprotein endopeptidase OS=Salmonella typhimurium GN=gcp PE=3 SV=2 GCP_SALTY - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Salmonella typhimurium GN=gcp P... TSAD_SALA4 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella agona (strain SL483) GN=tsaD PE=3 SV=1 TSAD_SALHS - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella heidelberg (strain SL476) GN=tsaD PE=3 ... gi\|205348610, gi... - gi\|205348610\|gb\|EDZ35241.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s... gi\|205337810, gi... - gi\|205337810\|gb\|EDZ24574.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s...	352.0	[0..39]	[400..1]
TSAD_ACTP2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strai... gi\|32035197 - gi\|32035197\|ref\|ZP_00135231.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... TSAD_ACTPJ - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain... TSAD_ACTP7 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain...	351.0	[0..39]	[399..1]
tr\|D7HDL9\|D7HDL9... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae GN=tsaD PE=3 SV=1, tRNA N6-adenosi... gi\|229332108, gi... - gi\|229530335\|ref\|ZP_04419723.1\| endopeptidase [Vibrio cholerae 12129(1)], gi\|229332108\|gb\|EEN97596.1... gi\|150419451, gi... - gi\|75823731\|ref\|ZP_00753215.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|153214950, gi... - gi\|153214950\|ref\|ZP_01949733.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae 1587], gi\|1241150...	351.0	[0..39]	[401..1]
gi\|23466489, gi\|... - gi\|23466489\|ref\|ZP_00122077.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	351.0	[0..39]	[401..1]
gi\|75815669 - gi\|75815669\|ref\|ZP_00746166.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	351.0	[0..39]	[401..2]
GCP_SALPA - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Salmonella paratyphi A GN=gcp P... GCP_SALCH - Probable O-sialoglycoprotein endopeptidase OS=Salmonella choleraesuis GN=gcp PE=3 SV=1 TSAD_SALPC - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=tsaD PE... TSAD_SALPK - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=tsaD ... TSAD_SALPA - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)... gi\|194471173, gi... - gi\|194471173\|ref\|ZP_03077157.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enteri... TSAD_SALCH - tRNA N6-adenosine threonylcarbamoyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=tsaD PE... gi\|205343466, gi... - gi\|205343466\|gb\|EDZ30230.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s... gi\|205333878, gi... - gi\|205333878\|gb\|EDZ20642.1\| O-sialoglycoprotein endopeptidase [Salmonella enterica subsp. enterica s... GCP_SALCH - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Salmonella choleraesuis GN=gcp ...	351.0	[0..39]	[400..1]

Back

Predicted Domain #1

Region A:
Residues: [1-412]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCLVYNSIL CKQRRISLKV LQQFRCWNIS KTFLSYRTLT ALAIETSCDD TSVSVVRTSD  60
   61 SSSHCQNEII CLNTHRTISK YEAYGGIHPT IVIHEHQKNL AKVIQRTISD AARSGITDFD 120
  121 LIAVTRGPGM IGPLAVGLNT AKGLAVGLQK PLLAVHHMQA HALAVQLEKS IDFPYLNILV 180
  181 SGGHTMLVYS NSLLNHEIIV TTSDIAVGDY LDKCAKYLGI PWDNEMPAAA LEQFASPEIN 240
  241 STSYSLKPPI PLNTREKVHS ASFSFSGLES YACRIIRKTP LNLSEKKFFA YQLQYAAFQH 300
  301 ICQKTLLALK RLDLSKVKYL VCSGGVARNE LLKKMLNDTL MVLQFEHQPT DIKLVYPSPD 360
  361 ICSDNAAMIG YTAIQMFKAG YTSSFDVEPI RKWPINQILT VEGWLTKKNK KV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits