YRC Public Data Repository - Protein Structure Prediction

Protein:	fta7
Organism:	Schizosaccharomyces pombe
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fta7.

Description	E-value	Query Range	Subject Range
gi\|67540248, gi\|... - gi\|67540248\|ref\|XP_663898.1\| hypothetical protein AN6294.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	214.0	[0..2]	[173..26]
gi\|42552176, gi\|... - gi\|46138495\|ref\|XP_390938.1\| hypothetical protein FG10762.1 [Gibberella zeae PH-1], gi\|42552176\|gb\|E...	170.0	[0..1]	[148..370]
gi\|66853202, gi\|... - gi\|71001766\|ref\|XP_755564.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668532...	168.0	[0..2]	[202..25]
gi\|39977657, gi\|... - gi\|39977657\|ref\|XP_370216.1\| hypothetical protein MGG_06713 [Magnaporthe grisea 70-15], gb\|EAA55056....	167.0	[0..2]	[148..257]
gi\|46226588 - gi\|46226588\|gb\|EAK87576.1\| hypothetical protein with signal peptide and transmembrane region at C-te... gi\|66356822 - gi\|66356822\|ref\|XP_625589.1\| hypothetical protein [Cryptosporidium parvum Iowa II]	167.0	[0..48]	[181..229]
gi\|67594158 - gi\|67594158\|ref\|XP_665779.1\| hypothetical protein [Cryptosporidium hominis TU502] gi\|54656608 - gi\|54656608\|gb\|EAL35549.1\| hypothetical protein Chro.50416 [Cryptosporidium hominis]	165.0	[0..48]	[181..230]
gi\|114196222, gi... - gi\|115383966\|ref\|XP_001208530.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	163.0	[0..2]	[157..25]
gi\|28925318, gi\|... - gi\|32413194\|ref\|XP_327077.1\| predicted protein [Neurospora crassa], gi\|28925318\|gb\|EAA34396.1\| predi... gi\|85110788 - gi\|85110788\|ref\|XP_963632.1\| hypothetical protein NCU06791 [Neurospora crassa OR74A]	146.0	[0..2]	[148..387]
gi\|90304566, gi\|... - gi\|90304566\|gb\|EAS34197.1\| hypothetical protein CIMG_05221 [Coccidioides immitis RS], gi\|119190347\|r... gi\|240107204 - gi\|240107204\|gb\|EER25389.1\| hypothetical protein CPC735_064890 [Coccidioides posadasii C735 delta SO...	138.0	[0..3]	[225..29]
gi\|111064126 - gi\|111064126\|gb\|EAT85246.1\| predicted protein [Phaeosphaeria nodorum SN15]	50.0	[0..1]	[157..89]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMKRRVRAV RRDQIQKRWR PLEDKQRQEI IIIFRTCSRL VLNTIKSETR KSLAEEWFMN  60
   61 ILLKIEAPLR NLPVPRKRKE SILFSQLLSS NMQLEQQLYS DLDHINVLQQ ELKVETARLE 120
  121 NEQKSYEEMK QNMAINNSRL ADLKSKLHPY LKKGLKISHD NFSDSNDFSF QKKLNTEDSN 180
  181 TSKTSTLDMY KEKLKPFTKT MQIHANKTVQ LSQTIQKATL LLQRLNNTKN IGLNKSSKLK 240
  241 IKNI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits