YRC Public Data Repository - Protein Structure Prediction

Protein:	tim54
Organism:	Schizosaccharomyces pombe
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tim54.

Description	E-value	Query Range	Subject Range
orf19.12608 - orf19.5143 CGDID:CAL0002576 Assembly 19, Contig19-20219 (42229, 41027) CDS, reverse complemented, tr... gi\|68478058, gi\|... - gi\|68478058\|ref\|XP_716898.1\| hypothetical protein CaO19.12608 [Candida albicans SC5314], gi\|46438585...	425.0	[0..9]	[334..28]
gi\|46108614, gi\|... - gi\|46108614\|ref\|XP_381365.1\| hypothetical protein FG01189.1 [Gibberella zeae PH-1], gi\|42545812\|gb\|E...	408.0	[0..2]	[342..37]
gi\|49092722, gi\|... - gi\|67526455\|ref\|XP_661289.1\| hypothetical protein AN3685.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	395.0	[0..2]	[331..429]
TIM54_YEAST - Mitochondrial import inner membrane translocase subunit TIM54 OS=Saccharomyces cerevisiae (strain AT... TIM54 - Component of the mitochondrial TIM22 complex involved in insertion of polytopic proteins into the in...	390.0	[0..8]	[325..32]
TIM54_ASHGO - Mitochondrial import inner membrane translocase subunit TIM54 OS=Ashbya gossypii (strain ATCC 10895 ... TIM54_ASHGO - Mitochondrial import inner membrane translocase subunit TIM54 OS=Ashbya gossypii GN=TIM54 PE=3 SV=1	376.0	[0..8]	[334..37]
TIM54_NEUCR - Mitochondrial import inner membrane translocase subunit tim-54 - Neurospora crassa gi\|85068267 - gi\|85068267\|ref\|XP_962149.1\| hypothetical protein NCU07295.1 [Neurospora crassa OR74A]	376.0	[0..2]	[330..4]
TIM54_CANGA - Mitochondrial import inner membrane translocase subunit TIM54 OS=Candida glabrata GN=TIM54 PE=3 SV=1 TIM54_CANGA - Mitochondrial import inner membrane translocase subunit TIM54 OS=Candida glabrata (strain ATCC 2001 ...	343.0	[0..7]	[335..13]
gi\|116195674, gi... - gi\|88180348\|gb\|EAQ87816.1\| hypothetical protein CHGG_04435 [Chaetomium globosum CBS 148.51], gi\|1161...	336.0	[0..2]	[331..32]
TIM54_ASPOR - Mitochondrial import inner membrane translocase subunit tim54 OS=Aspergillus oryzae (strain ATCC 421... TIM54_ASPOR - Mitochondrial import inner membrane translocase subunit tim54 OS=Aspergillus oryzae GN=tim54 PE=3 SV...	334.0	[0..2]	[331..1]

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Predicted Domain #1

Region A:
Residues: [1-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTIKSYMP GRNMSIFLGF VAGISGAIYY DRRQKNLIIE KYCSQVRHLA DQPMAPLELP  60
   61 RKLKVYLHGP PGDGIYVARE EFEEYIRPIF NAAAIEFETV ESKGEGNLLE QVARTVYNKR 120
  121 HNISEVSEPE KNLLSVLKPS VDPPAIVLLG RHALKEFLYG VRYGFSDDIM KRKLETEKLE 180
  181 ANNKEEKEEK EGKDDKDDKE DSNDTKNDKK ISKNEVDSSL IEASPLTGQV PPKFLDTIAI 240
  241 FPLPNLLGFS NTPKRLSRFF KRRELADELG AIAVNVALSR D

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.84
Match:	2bonA
Description:	No description for 2bonA was found.

Predicted Domain #2

Region A:
Residues: [282-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTKFPKQDGT LLLAEEETDW PKQFFTRSDL ENRIWTAPFL QDSDEIRFFE NIDIFDSTKA  60
   61 KQDKYE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits