YRC Public Data Repository - Protein Structure Prediction

Protein:	ssl3
Organism:	Schizosaccharomyces pombe
Length:	559 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssl3.

Description	E-value	Query Range	Subject Range
gi\|46125931, gi\|... - gi\|46125931\|ref\|XP_387519.1\| hypothetical protein FG07343.1 [Gibberella zeae PH-1], gi\|42553316\|gb\|E...	745.0	[0..13]	[542..1701]
gi\|32412632, gi\|... - gi\|32412632\|ref\|XP_326796.1\| hypothetical protein ( (AL451021) hypothetical protein [Neurospora cras... gi\|85102788 - gi\|85102788\|ref\|XP_961389.1\| hypothetical protein NCU01303 [Neurospora crassa OR74A]	366.0	[0..19]	[547..288]
gi\|88183218, gi\|... - gi\|88183218\|gb\|EAQ90686.1\| hypothetical protein CHGG_02621 [Chaetomium globosum CBS 148.51], gi\|1162...	348.0	[0..19]	[550..264]
gi\|40738703, gi\|... - gi\|67540766\|ref\|XP_664157.1\| hypothetical protein AN6553.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	321.0	[0..17]	[530..231]
gi\|83771707 - gi\|83771707\|dbj\|BAE61837.1\| unnamed protein product [Aspergillus oryzae] gi\|169777009 - gi\|169777009\|ref\|XP_001822970.1\| hypothetical protein [Aspergillus oryzae RIB40]	286.0	[0..17]	[539..286]
gi\|70984190, gi\|... - gi\|70984190\|ref\|XP_747613.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668452...	282.0	[0..17]	[530..272]
gi\|115386256, gi... - gi\|115386256\|ref\|XP_001209669.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	281.0	[0..17]	[530..247]
gi\|38107025, gi\|... - gi\|39972459\|ref\|XP_367620.1\| hypothetical protein MG07531.4 [Magnaporthe grisea 70-15], gb\|EAA53254....	280.0	[0..19]	[530..334]
gi\|111070231 - gi\|111070231\|gb\|EAT91351.1\| hypothetical protein SNOG_01702 [Phaeosphaeria nodorum SN15]	141.0	[0..18]	[198..255]
gi\|90297986, gi\|... - gi\|90297986\|gb\|EAS27617.1\| hypothetical protein CIMG_10222 [Coccidioides immitis RS], gi\|119173550\|r...	117.0	[0..17]	[103..219]

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Predicted Domain #1

Region A:
Residues: [1-559]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLNETDAR ILVTSRHLFL WPLAETYFKN AEKVLQDCGV CDSFGRLLST GLQCLYSVLM  60
   61 DTKMEPRVEL LTRKRICEVL LSHTVEYADV EAILNRALII AEQHNLTEYK FSLQLLLSRV 120
  121 FCRTSPKAAK VLLTRCVREA EEYAKVAEIY HSNNQSNPHR WVYEFLLATL EFQNVSQVAN 180
  181 SIHNYANHHK HQHLQLLAMI LNQSLPMDEI STDSDQISIL CLVTQIAQCL RKGEILLARE 240
  241 ILPKIHSKLE SETFVWPSSY IDFFIDDTSK ISIKWMSINQ LYLLIYLISG FCYISDSTSG 300
  301 RASRFLQEGL RITGDFKHQE RCVLEYLESQ KWINNITKDM KYYLIATYLS RSRLSKAERI 360
  361 LQSTEDDQTG FLGILKGMYL QKRGDLKKAE VHYRETAKNF SFRTDTFIIS TLNLINILED 420
  421 SAAASRCLES IEPLCNKHEK KIFKLWLLVL KVIREGPQVH QSNVLPRVIQ QSSEYANTQL 480
  481 QYISLTELSE RFGKLEHAEK MAISALELAK KSKDELWCLI SGRILEDFYR SVQKYDKMRQ 540
  541 QALENSAYSK LIEDIYSFV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.7
Match:	2gw1A
Description:	No description for 2gw1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits