YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC144.18
Organism:	Schizosaccharomyces pombe
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC144.18.

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	160.0	[0..2]	[344..310]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	136.0	[0..37]	[310..428]
GMT_ASPFU - GDP-mannose transporter OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1... GMT_ASPFU - GDP-mannose transporter OS=Aspergillus fumigatus GN=gmt1 PE=3 SV=1 GMT_ASPFC - GDP-mannose transporter OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=gmt1 PE=...	136.0	[0..4]	[342..36]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	134.0	[0..8]	[329..19]
gi\|116000887 - gi\|116000887\|emb\|CAL50567.1\| Putative phosphate/phosphoenolpyru (ISS) [Ostreococcus tauri]	131.0	[0..6]	[316..70]
gi\|109470339 - gi\|109470339\|ref\|XP_001078382.1\| PREDICTED: similar to GDP-fucose transporter 1 isoform 1 [Rattus no...	131.0	[0..2]	[328..348]
gi\|42544808, gi\|... - gi\|46108454\|ref\|XP_381285.1\| hypothetical protein FG01109.1 [Gibberella zeae PH-1], gi\|42544808\|gb\|E...	130.0	[0..20]	[343..283]
GMT_PHANO - GDP-mannose transporter OS=Phaeosphaeria nodorum GN=VRG4 PE=3 SV=1 GMT_PHANO - GDP-mannose transporter OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=VRG4 ...	129.0	[0..13]	[342..41]
gi\|47210149 - gi\|47210149\|emb\|CAF95031.1\| unnamed protein product [Tetraodon nigroviridis]	129.0	[0..4]	[319..6]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNHMLNRIS KSPILPVVSY CMASILMTLT NKYVLSSPGY NMNFLLLTVQ STVCVAAIGI  60
   61 LKRLKVINYR DFDFREAKFW FPISFLLVAM IYTASKALQF LSVPVYTIFK NLTIIIIAYG 120
  121 EVLWFGGHVT ALTLFSFGLM VLSSIVAAWA DIQS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.82
Match:	2i68A
Description:	No description for 2i68A was found.

Predicted Domain #2

Region A:
Residues: [155-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSFASQTLNS GYLWMVLNCL TNAAFVLAMR KRIKLTNFRD FDTMFYNNLL SIPVLVICTL  60
   61 FTEDWSAENI AQNFPPDAKF GVLMAMAISG VSSVGISYTS AWCVRVTSST TYSMVGALNK 120
  121 LPLAIAGLVF FDAPITFGSV TAILLGFISG VVYAVAKSQQ QRQKDPATIL PMTHNPVSAS 180
  181 SQSMRDSLSK S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.481486
Match:	PF03151.7
Description:	No description for PF03151.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits