YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC20F10.10
Organism:	Schizosaccharomyces pombe
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC20F10.10.

Description	E-value	Query Range	Subject Range
gi\|40745025, gi\|... - gi\|67523361\|ref\|XP_659741.1\| hypothetical protein AN2137.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	166.0	[0..1]	[219..331]
gi\|83770269 - gi\|83770269\|dbj\|BAE60402.1\| unnamed protein product [Aspergillus oryzae] gi\|169762682 - gi\|169762682\|ref\|XP_001727241.1\| hypothetical protein [Aspergillus oryzae RIB40]	165.0	[0..1]	[219..334]
gi\|94363657 - gi\|94363657\|ref\|XP_914415.2\| PREDICTED: similar to cyclin fold protein 1 [Mus musculus]	163.0	[0..38]	[239..424]
gi\|159130007 - gi\|159130007\|gb\|EDP55121.1\| G2/mitotic-specific cyclin, putative [Aspergillus fumigatus A1163] gi\|66853588, gi\|... - gi\|71002538\|ref\|XP_755950.1\| G2/mitotic-specific cyclin (Clb3) [Aspergillus fumigatus Af293], gi\|668...	162.0	[0..1]	[219..328]
gi\|114195591, gi... - gi\|115388003\|ref\|XP_001211507.1\| G2/mitotic-specific cyclin cdc13 [Aspergillus terreus NIH2624], gi\|...	160.0	[0..1]	[219..304]
cdc13 - cyclin Cdc13 CG23_SCHPO - G2/mitotic-specific cyclin cdc13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc13 PE=...	158.0	[0..9]	[233..177]
gi\|38111078, gi\|... - gi\|39971499\|ref\|XP_367140.1\| hypothetical protein MGG_07065 [Magnaporthe grisea 70-15], gb\|EAA56710....	157.0	[0..4]	[219..337]
gi\|116206764, gi... - gi\|88183272\|gb\|EAQ90740.1\| hypothetical protein CHGG_02675 [Chaetomium globosum CBS 148.51], gi\|1162...	154.0	[0..26]	[219..376]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAFTLLTS KDNTDEDEEH LELSSFNQEK LLEMISVFLS RLTRLNDSKQ EATESDQIPL  60
   61 SPTSLKNPCL IFSAKNVPSI SIQAYLTRIL KYCPATNDVF LSVLIYLDRI VHHFHFTVFI 120
  121 NSFNIHRFLI AGFTAASKFF SDVFYTNSRY AKVGGIPLHE LNHLELSFFV FNDFNLFISL 180
  181 EDLQAYGDLL LSWYRQNGQN YNPTDVSCSI ESPISHTPQQ NQQDEQPRRP IMDRRLLSSH 240
  241 SIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	2jgzB
Description:	No description for 2jgzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits