YRC Public Data Repository - Protein Structure Prediction

Protein:	mug86
Organism:	Schizosaccharomyces pombe
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug86.

Description	E-value	Query Range	Subject Range
gi\|190406445 - gi\|190406445\|gb\|EDV09712.1\| transmembrane protein [Saccharomyces cerevisiae RM11-1a] ADY2_YEAST - Accumulation of dyads protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADY2 PE=... ADY2 - Acetate transporter required for normal sporulation; phosphorylated in mitochondria ORFP:2449 - YCR010C, Contig c87 5118-5969 reverse complement gi\|151943830 - gi\|151943830\|gb\|EDN62130.1\| accumulation of dyads involved protein [Saccharomyces cerevisiae YJM789]	303.0	[0..6]	[287..2]
gi\|85094037 - gi\|85094037\|ref\|XP_959806.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32410835, gi\|... - gi\|32410835\|ref\|XP_325898.1\| hypothetical protein [Neurospora crassa], gi\|28921261\|gb\|EAA30570.1\| hy...	290.0	[0..58]	[296..46]
gi\|28564127 - gi\|28564127\|gb\|AAO32442.1\| FUN34 [Saccharomyces bayanus]	285.0	[0..21]	[287..4]
gi\|28564914 - gi\|28564914\|gb\|AAO32541.1\| FUN34 [Saccharomyces castellii]	280.0	[0..4]	[287..14]
GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPR1 PE=1 SV=3 GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica GN=GPR1 PE=1 SV=3	277.0	[0..33]	[287..35]
gi\|14970589 - gi\|14970589\|emb\|CAA52243.2\| glyxoxylate pathway regulator [Yarrowia lipolytica]	276.0	[0..33]	[287..35]
gi\|32189733, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|15... gi\|21629327, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|21...	275.0	[0..2]	[282..62]
gi\|49640141, gi\|... - gi\|50302153\|ref\|XP_451010.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640141\|emb\|CAH0259... gi\|49640141 - gi\|49640141\|emb\|CAH02598.1\| KLLA0A00242p [Kluyveromyces lactis]	272.0	[0..6]	[283..2]
gi\|116200624, gi... - gi\|88175571\|gb\|EAQ83039.1\| hypothetical protein CHGG_10857 [Chaetomium globosum CBS 148.51], gi\|1162...	269.0	[0..58]	[292..39]

Back

Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNPSRSNS RSKNGDLESG LKFVDNDHDS KDIEARNRNH FYGFRAEPIY DQTERLANQV  60
   61 AELQEQQKRL FGPSGADFEP NIHRLRYINY GNPAPFGLSA FAFTTFLLSL FNVNAGHVKV 120
  121 SNMVTAPAAF YGGLAQLLAS MWEMASGNTF GGAVFGSYGC FWLSYASIFI PWFNIQN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [178-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYDDPNDFNY AIGLYLICWF IFTFLVLLCT VRSTLAFFSL FMSLDVCFLL LACAFLRTSD  60
   61 GSPNVVLIRV GGAFGIFSAC AAWYNAMAGL ATIENSFFTV PRAIFPWSLE GLGPEEANRR 120
  121 RMMADDK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits