YRC Public Data Repository - Protein Structure Prediction

Protein:	spc34
Organism:	Schizosaccharomyces pombe
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spc34.

Description	E-value	Query Range	Subject Range
gi\|67524621, gi\|... - gi\|67524621\|ref\|XP_660372.1\| hypothetical protein AN2768.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	219.0	[0..1]	[153..1]
gi\|85093145 - gi\|85093145\|ref\|XP_959634.1\| hypothetical protein NCU02221 [Neurospora crassa OR74A] gi\|28921080, gi\|... - gi\|32421107\|ref\|XP_330997.1\| predicted protein [Neurospora crassa], gi\|28921080\|gb\|EAA30398.1\| predi...	140.0	[0..1]	[92..1]
gi\|46138499, gi\|... - gi\|46138499\|ref\|XP_390940.1\| hypothetical protein FG10764.1 [Gibberella zeae PH-1], gi\|42550820\|gb\|E...	124.0	[0..1]	[92..1]
gi\|159128010 - gi\|159128010\|gb\|EDP53125.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|66852633, gi\|... - gi\|71000629\|ref\|XP_754996.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668526...	117.0	[0..1]	[139..1]
gi\|38102386, gi\|... - gi\|39973933\|ref\|XP_368357.1\| hypothetical protein MG00887.4 [Magnaporthe grisea 70-15], gb\|EAA49229....	114.0	[0..2]	[92..4]
gi\|83773196 - gi\|83773196\|dbj\|BAE63323.1\| unnamed protein product [Aspergillus oryzae] gi\|169779984 - gi\|169779984\|ref\|XP_001824456.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220690311, gi... - gi\|238505990\|ref\|XP_002384197.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22...	103.0	[0..1]	[112..1]
gi\|115402739, gi... - gi\|115402739\|ref\|XP_001217446.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	100.0	[0..1]	[112..1]
gi\|111055646 - gi\|111055646\|gb\|EAT76766.1\| hypothetical protein SNOG_15928 [Phaeosphaeria nodorum SN15]	97.0	[0..1]	[87..1]
gi\|90305501, gi\|... - gi\|90305501\|gb\|EAS35132.1\| hypothetical protein CIMG_00486 [Coccidioides immitis RS], gi\|119192218\|r...	88.0	[0..2]	[97..3]
gi\|88175749, gi\|... - gi\|88175749\|gb\|EAQ83217.1\| hypothetical protein CHGG_09621 [Chaetomium globosum CBS 148.51], gi\|1162...	72.0	[0..23]	[92..5]

Back

Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLLNYLQS IAATSEKLLE PENPNAARFT DAVLHTHAIT DLIRDTQKEE LIAAEFKSLP  60
   61 KDWSERLASE NPADYVACIE ELLDIYP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.013228
Match:	PF08657.1
Description:	No description for PF08657.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGGREYLET LVEKYNLHMS GIENLENVLL EQKEQLQQLE KRQTDQVSAR ENILQRETSE  60
   61 IQRLEREIEK VKQLIQS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.971
Match:	1x79B
Description:	Crystal structure of human GGA1 GAT domain complexed with the GAT-binding domain of Rabaptin5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits