YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC713.03
Organism:	Schizosaccharomyces pombe
Length:	526 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC713.03.

Description	E-value	Query Range	Subject Range
gi\|115437406, gi... - gi\|115437406\|ref\|XP_001217802.1\| D-lactate dehydrogenase 2, mitochondrial precursor [Aspergillus ter...	368.0	[0..35]	[526..62]
gi\|116192003, gi... - gi\|88181632\|gb\|EAQ89100.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	364.0	[0..7]	[524..35]
gi\|85084552 - gi\|85084552\|ref\|XP_957332.1\| D-lactate dehydrogenase 2, mitochondrial precursor [Neurospora crassa O... gi\|28918422, gi\|... - gi\|32411631\|ref\|XP_326296.1\| hypothetical protein [Neurospora crassa], gi\|28918422\|gb\|EAA28096.1\| D-...	363.0	[0..30]	[526..56]
gi\|89157538, gi\|... - gi\|89204477\|ref\|ZP_01183054.1\| Glycolate oxidase subunit GlcD [Bacillus weihenstephanensis KBAB4], g...	362.0	[0..60]	[525..4]
gi\|51977507, gi\|... - gi\|52144038\|ref\|YP_082789.1\| (S)-2-hydroxy-acid oxidase, subunit D [Bacillus cereus E33L], gi\|519775...	362.0	[0..60]	[525..4]
gi\|47556735, gi\|... - gi\|47566182\|ref\|ZP_00237210.1\| glycolate oxidase, subunit glcD [Bacillus cereus G9241], gi\|47556735\|...	361.0	[0..60]	[525..4]
gi\|229090349, gi... - gi\|229090349\|ref\|ZP_04221592.1\| Glycolate oxidase subunit [Bacillus cereus Rock3-42], gi\|228692932\|g... gi\|228944994, gi... - gi\|228944994\|ref\|ZP_04107355.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar monterrey ... gi\|218902503, gi... - gi\|218902503\|ref\|YP_002450337.1\| glycolate oxidase, subunit GlcD [Bacillus cereus AH820], gi\|2185358... gi\|195991992, gi... - gi\|196035315\|ref\|ZP_03102720.1\| glycolate oxidase, subunit GlcD [Bacillus cereus W], gi\|195991992\|gb... gi\|228926426, gi... - gi\|228926426\|ref\|ZP_04089498.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar pondicheri... gi\|49477180, gi\|... - gi\|49477180\|ref\|YP_035523.1\| (S)-2-hydroxy-acid oxidase, subunit D [Bacillus thuringiensis serovar k...	360.0	[0..60]	[525..4]
gi\|228899975, gi... - gi\|228899975\|ref\|ZP_04064213.1\| Glycolate oxidase subunit [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228795337, gi... - gi\|228964353\|ref\|ZP_04125470.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar sotto str.... gi\|218544228, gi... - gi\|218896328\|ref\|YP_002444739.1\| glycolate oxidase, subunit GlcD [Bacillus cereus G9842], gi\|2185442... gi\|75760003, gi\|... - gi\|75760003\|ref\|ZP_00740070.1\| (S)-2-hydroxy-acid oxidase chain D [Bacillus thuringiensis serovar is...	360.0	[0..60]	[525..4]
gi\|227006774, gi... - gi\|227815863\|ref\|YP_002815872.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. CDC 684], ... gi\|177651493, gi... - gi\|177651493\|ref\|ZP_02934282.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0174], gi\|... gi\|229603580, gi... - gi\|229603580\|ref\|YP_002865814.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0248], gi... gi\|170706340, gi... - gi\|170706340\|ref\|ZP_02896801.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0389], gi\|... gi\|254682544 - gi\|254682544\|ref\|ZP_05146405.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. CNEVA-9066] gi\|254726206 - gi\|254726206\|ref\|ZP_05187988.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A1055] gi\|49178155, gi\|... - gi\|49184228\|ref\|YP_027480.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Sterne], gi\|49... gi\|190568728, gi... - gi\|190568728\|ref\|ZP_03021632.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis Tsiankovskii-I],... gi\|254733962 - gi\|254733962\|ref\|ZP_05191676.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Western Nor... gi\|254740350 - gi\|254740350\|ref\|ZP_05198041.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Kruger B] gi\|254753738 - gi\|254753738\|ref\|ZP_05205773.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Vollum] gi\|254758834 - gi\|254758834\|ref\|ZP_05210861.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Australia 9... gi\|47526574, gi\|... - gi\|47526574\|ref\|YP_017923.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. 'Ames Ancestor... gi\|167634275, gi... - gi\|167634275\|ref\|ZP_02392596.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0442], gi\|... gi\|30255252, gi\|... - gi\|30261398\|ref\|NP_843775.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. Ames], gi\|3025... gi\|164713870, gi... - gi\|165870375\|ref\|ZP_02215030.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0488], gi\|... gi\|65318663, gi\|... - gi\|65318663\|ref\|ZP_00391622.1\| COG0277: FAD/FMN-containing dehydrogenases [Bacillus anthracis str. A... gi\|170686830, gi... - gi\|170686830\|ref\|ZP_02878050.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0465], gi\|... gi\|167639245, gi... - gi\|167639245\|ref\|ZP_02397517.1\| glycolate oxidase, subunit GlcD [Bacillus anthracis str. A0193], gi\|...	360.0	[0..60]	[525..4]
gi\|83771232 - gi\|83771232\|dbj\|BAE61364.1\| unnamed protein product [Aspergillus oryzae] gi\|169776061 - gi\|169776061\|ref\|XP_001822497.1\| hypothetical protein [Aspergillus oryzae RIB40]	359.0	[0..14]	[526..27]

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Predicted Domain #1

Region A:
Residues: [1-526]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSLQCRRVI PFGKLSLSLH APRNALRFVH KPAFTFESYK SLHRDPKYAK LSEQDVQVFK  60
   61 SIIGKDGSLI DGLDKSTDPA DLDAFNIDWM NKYRGKTQLA LKPKTTQQVS EILKYCNQKK 120
  121 LAVVPQGGNT GLVGGSVPVF DEIVLNLGLM NQIHTFDEIS GVITLDSGVI LENADNFLAE 180
  181 KGYMFPLDLG AKGSCQVGGC AATAAGGLRL LRYGSLHGSI LGMEAVLPDG TILDNLVTLR 240
  241 KDNTGLDIKQ LFIGSEGYLG VITKLSVICP KRPSSTNVAF FGVPSYENVL KAFSETRSHL 300
  301 TEILSAFELM DNTSQTLVDK YSGTQRPLED EHPFYVLVET QGSNKEHDEQ KITALVEDLL 360
  361 EKEIISDGVL AQDESQLRVL WERREGITEC LAKAGSGVYK YDVSLPLPVL YDLVNDTKKR 420
  421 LIEFNLLDDT PEHPVIDVVG FGHMGDGNLH LNIAVRQFDK RVEKCLEPWV YEWVSRHRGS 480
  481 ISAEHGLGLL KKPFVGYSKS KEMIHLMKTL KNVFDPNGIM LPYKYV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.0
Match:	2uuuA
Description:	No description for 2uuuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits