YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAPB24D3.02c
Organism:	Schizosaccharomyces pombe
Length:	543 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAPB24D3.02c.

Description	E-value	Query Range	Subject Range
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	288.0	[0..20]	[543..66]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	286.0	[0..12]	[536..13]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	283.0	[0..39]	[543..138]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	282.0	[0..12]	[540..84]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	281.0	[0..9]	[540..40]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	280.0	[0..5]	[543..106]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	278.0	[0..43]	[540..145]

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Predicted Domain #1

Region A:
Residues: [1-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDETIGMKKE FHDISVGDIE VGESAPVTED DKMLLNLGYK QEFKREFSLL AVFGQSFGSM  60
   61 GLCPSLVGSM AFSMNCGAGG MVWSWFVGAT CLLPIAFALS ELASSMPTSG SLYFWTAYLS 120
  121 PPKYRAFLSW FLGYVLALAY STGFASTIYA AAGLVQATAS VANPSYAPTK YEEYGIYVAL 180
  181 SFACSALIVL PTKFLARFSS FNVVFQICTI LIFIISLAAS STSETRNTGS YIFGNFENYS 240
  241 GWTNMGWSFI LCFTTPVWVL SGFESCATIV EEAKNASKAA PIAIISSLTV SLFMGFCIMI 300
  301 TIAGTMGHDF SSILNTPYGE PVSQVLYNNL GKRGAVGVSA VLIIALCFNC SALCLASSRE 360
  361 IFAFARDKGL PGSWIFRKLT PGGIPLNAIL LVNLYTIIVG LLMLVNVTAI SSIFNLAIIA 420
  421 FFISYSLPLV CRLLFNRL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.66
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [439-543]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPGKFYCGKF SKPISIVAVA WLWFMALMLL FPSYQNPNKV EMNWAIVVLG FTVFFCVGYY  60
   61 YLPKYGGKTF FKGPVKTVDE NVTEGVTVDF QADHVSKEDD GKSYN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits