YRC Public Data Repository - Protein Structure Prediction

Protein:	rpc25
Organism:	Schizosaccharomyces pombe
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpc25.

Description	E-value	Query Range	Subject Range
gi\|13359203 - gi\|13359203\|dbj\|BAB33335.1\| KIAA1665 protein [Homo sapiens]	190.0	[0..1]	[202..14]
gi\|109094365, gi... - gi\|109094365\|ref\|XP_001105322.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypepti... gi\|90077470 - gi\|90077470\|dbj\|BAE88415.1\| unnamed protein product [Macaca fascicularis]	184.0	[0..1]	[202..1]
RPC8_MOUSE - DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus GN=Polr3h PE=1 SV=2 gi\|149065819, gi... - gi\|27662966\|ref\|XP_216998.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide H...	178.0	[0..1]	[202..1]
gi\|91092914 - gi\|91092914\|ref\|XP_971430.1\| PREDICTED: similar to DNA-directed RNA polymerase III 25 kDa polypeptid...	176.0	[0..1]	[202..1]
RPC8_BOVIN - DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus GN=POLR3H PE=2 SV=1	176.0	[0..1]	[202..1]
gi\|73968962 - gi\|73968962\|ref\|XP_849136.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide H...	176.0	[0..1]	[202..1]
gi\|108871791, gi... - gi\|157130759\|ref\|XP_001661998.1\| DNA-directed RNA polymerase III 25 kDa polypeptide [Aedes aegypti],...	174.0	[0..1]	[202..1]
gi\|50540012, gi\|... - gi\|50540012\|ref\|NP_001002476.1\| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Danio re...	170.0	[0..1]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLSRFSDI ISIHPSNFWK PTKEALAEEI HKKYANKVIQ NIGLAICVYD FLKIGEGIIK  60
   61 YGDGSSYMNV VFRLIIFRPF RGEVMLGKIK SCSEEGIRVT ISFFDDIFIP KDMLFDPCVF 120
  121 RPDERAWVWK IEGEDGSEGT ELYFDIDEEI RFQIESEDFV DISPKRNKNA TAITGTEALE 180
  181 SVSPYTLIAS CSRDGLGIPA WWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.045757
Match:	2ckzB
Description:	No description for 2ckzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits