YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1773.03c
Organism:	Schizosaccharomyces pombe
Length:	459 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1773.03c.

Description	E-value	Query Range	Subject Range
gi\|119524573, gi... - gi\|119719453\|ref\|YP_919948.1\| 4-aminobutyrate aminotransferase [Thermofilum pendens Hrk 5], gi\|11952...	388.0	[0..3]	[458..9]
gi\|254686709 - gi\|254686709\|ref\|ZP_05150567.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. CNEVA-9066... gi\|254739066 - gi\|254739066\|ref\|ZP_05196768.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Western No... gi\|21398270 - ref\|NP_654255.1\| aminotran_3, Aminotransferase class-III [Bacillus anthracis str. A2012] gi\|254761905 - gi\|254761905\|ref\|ZP_05213754.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Australia ... gi\|254742312 - gi\|254742312\|ref\|ZP_05199998.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Kruger B] gi\|254756088 - gi\|254756088\|ref\|ZP_05208117.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Vollum] gi\|49183338, gi\|... - gi\|49183338\|ref\|YP_026590.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Sterne], gi\|4... gi\|47500740, gi\|... - gi\|47525592\|ref\|YP_016941.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. 'Ames Ancesto... gi\|30260495, gi\|... - gi\|30260495\|ref\|NP_842872.1\| 4-aminobutyrate aminotransferase [Bacillus anthracis str. Ames], gi\|302...	379.0	[0..4]	[452..13]
gi\|221241627, gi... - gi\|222097569\|ref\|YP_002531626.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacill... gi\|217961613, gi... - gi\|217961613\|ref\|YP_002340183.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacill... gi\|206745485, gi... - gi\|206976289\|ref\|ZP_03237197.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|42739163, gi\|... - gi\|42783235\|ref\|NP_980482.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus cereu...	379.0	[0..2]	[454..8]
gi\|52144923, gi\|... - gi\|52144923\|ref\|YP_081906.1\| 4-aminobutyrate aminotransferase [Bacillus cereus E33L], gi\|51978392\|gb...	378.0	[0..4]	[452..13]
gi\|65317747 - gi\|65317747\|ref\|ZP_00390706.1\| COG0160: 4-aminobutyrate aminotransferase and related aminotransferas...	378.0	[0..4]	[452..17]
gi\|47553759, gi\|... - gi\|47569576\|ref\|ZP_00240254.1\| 4-aminobutyrate aminotransferase [Bacillus cereus G9241], gi\|47553759...	378.0	[0..4]	[452..13]
gi\|196021976, gi... - gi\|196047227\|ref\|ZP_03114443.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|196034848, gi... - gi\|196034848\|ref\|ZP_03102255.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|228842947, gi... - gi\|228916760\|ref\|ZP_04080325.1\| Adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|225866105, gi... - gi\|225866105\|ref\|YP_002751483.1\| adenosylmethionine-8-amino-7-oxononanoate transaminase [Bacillus ce... gi\|49480907, gi\|... - gi\|49480907\|ref\|YP_038180.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus thuri...	377.0	[0..2]	[453..8]
gi\|46110573, gi\|... - gi\|46110573\|ref\|XP_382344.1\| hypothetical protein FG02168.1 [Gibberella zeae PH-1], gi\|42546260\|gb\|E...	377.0	[0..20]	[457..34]

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Predicted Domain #1

Region A:
Residues: [1-459]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETVTTTSS DKSEKKNYLF YTSPNHRPPT VVRAEGVYLY LEDGTRIMDA TGGAAVACLG  60
   61 HGNKEVIDAM HKQSEKVCYI HSMGFSNEPA DKLANLLVSE HPDVFARAYF ANSGSEAVET 120
  121 CLKLILQYWQ LVGEKQRCHI IARKQGYHGN TLFALSVGGM KPRKQPYEGV FSHTTSHVSP 180
  181 CFEYRYKENG ETTEEYVARL AKELEDEILR VGPEKVAAFV AETVSGACTG CATPVPGYFK 240
  241 AMRKVCDKYG VIFYLDEVMS GIGRTGTMHA WEQEGVTPDI QSIAKCLGGG YQPISGALVG 300
  301 HRIMNVFEQK DAAMAGFFTY QAHPIACSAA LAVQTILRRD HLVERAAEMG KYLSEKLHET 360
  361 FDSHPNVGNI RGRGLFWGLE IVKDKATKEC FPPEYKVGSL ANKIGCEHGV FVYPGMGTID 420
  421 GTRGDHVLLA PPYIITREQI DELVEALSKT ITSTVAALP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.69897
Match:	2e54A
Description:	No description for 2e54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits