YRC Public Data Repository - Protein Structure Prediction

Protein:	trx2
Organism:	Schizosaccharomyces pombe
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trx2.

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	135.0	[0..13]	[120..37]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	134.0	[0..13]	[120..37]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	133.0	[0..16]	[120..3]
gi\|77546741, gi\|... - gi\|77920658\|ref\|YP_358473.1\| thioredoxin [Pelobacter carbinolicus DSM 2380], gi\|77546741\|gb\|ABA90303...	131.0	[0..16]	[120..3]
gi\|116057647 - gi\|116057647\|emb\|CAL53850.1\| Thioredoxin (ISS) [Ostreococcus tauri]	129.0	[0..20]	[120..114]
gi\|75428528, gi\|... - gi\|75428528\|ref\|ZP_00731730.1\| thiol-disulfide isomerase and thioredoxins [Actinobacillus succinogen...	129.0	[0..16]	[120..1]
gi\|148654106, gi... - gi\|91770948\|ref\|ZP_01272767.1\| Thioredoxin [Psychrobacter sp. PRwf-1], gi\|91719962\|gb\|EAS85892.1\| Th...	129.0	[0..15]	[120..1]
gi\|67924828, gi\|... - gi\|67924828\|ref\|ZP_00518225.1\| Thioredoxin [Crocosphaera watsonii WH 8501], gi\|67853315\|gb\|EAM48677....	129.0	[0..16]	[120..1]
gi\|25282775 - pir\|\|AD1813 thioredoxin [imported] - Nostoc sp. (strain PCC 7120) gi\|75702591, gi\|... - gi\|75908866\|ref\|YP_323162.1\| thioredoxin [Anabaena variabilis ATCC 29413], gi\|75702591\|gb\|ABA22267.1... gi\|7427614, gi\|1... - gi\|7427614\|pir\|\|TXAI thioredoxin 1 - Anabaena sp, gi\|142118\|gb\|AAA22049.1\| thioredoxin THIO1_NOSSO - Thioredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) GN=trxA PE=1 SV=2 THIO1_NOSS1 - Thioredoxin-1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trxA PE=3 SV=2	128.0	[0..16]	[120..1]
gi\|33566268 - gi\|33566268\|emb\|CAE37179.1\| thioredoxin 1 [Bordetella parapertussis] gi\|33596499 - gi\|33596499\|ref\|NP_884142.1\| thioredoxin 1 [Bordetella parapertussis 12822] gi\|33592390, gi\|... - gi\|33592390\|ref\|NP_880034.1\| thioredoxin 1 [Bordetella pertussis Tohama I], gi\|33572035\|emb\|CAE41559...	128.0	[0..15]	[120..34]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSFALRRSF TSSRILRKVN AVESFGDYNT RISADKVTVV DFYADWCGPC KYLKPFLEKL  60
   61 SEQNQKASFI AVNADKFSDI AQKNGVYALP TMVLFRKGQE LDRIVGADVK TLSSLLAKYQ 120
  121 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.09691
Match:	2h71A
Description:	No description for 2h71A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits