YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC83.06c
Organism:	Schizosaccharomyces pombe
Length:	59 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC83.06c.

Description	E-value	Query Range	Subject Range
orf19.8380, orf1... - orf19.760 CGDID:CAL0001889 Assembly 19, Contig19-10073 (26337, 26708) CDS, translated using codon ta... gi\|68484933, gi\|... - gi\|68485008\|ref\|XP_713570.1\| likely mitochondrial ribosomal protein L36 [Candida albicans SC5314], g...	84.0	[0..6]	[59..70]
RTC6 - Homolog of the prokaryotic ribosomal protein L36, likely to be a mitochondrial ribosomal protein cod... RTC6_YEAST - 54S ribosomal protein RTC6, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	81.0	[0..3]	[59..33]
gi\|30687686, gi\|... - gi\|30687686\|ref\|NP_850857.1\| ribosomal protein L36 family protein [Arabidopsis thaliana], gi\|2224240...	80.0	[0..22]	[59..1]
gi\|45198462, gi\|... - gi\|45198462\|ref\|NP_985491.1\| AFL057Wp [Ashbya gossypii ATCC 10895], gi\|44984413\|gb\|AAS53315.1\| AFL05... gi\|44984413 - gi\|44984413\|gb\|AAS53315.1\| AFL057Wp [Ashbya gossypii ATCC 10895]	80.0	[0..8]	[59..29]
gi\|49652153, gi\|... - gi\|50405701\|ref\|XP_456489.1\| hypothetical protein DEHA0A03817g [Debaryomyces hansenii CBS767], gi\|49...	76.0	[0..4]	[59..28]
gi\|134116879, gi... - gi\|50255284\|gb\|EAL18019.1\| hypothetical protein CNBK0400 [Cryptococcus neoformans var. neoformans B-... gi\|58260982, gi\|... - gi\|58260982\|ref\|XP_567901.1\| 50s ribosomal protein l36 [Cryptococcus neoformans var. neoformans JEC2...	75.0	[0..18]	[59..66]
MRPL36 - mitochondrial ribosomal protein L36 ENSPTRT00000031035 - null	75.0	[0..8]	[58..51]
RM36_DANRE - 39S ribosomal protein L36, mitochondrial OS=Danio rerio GN=mrpl36 PE=3 SV=1	75.0	[0..2]	[59..59]
gi\|49643941\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|49643941, gi\|... - gi\|50309589\|ref\|XP_454806.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643941\|emb\|CAG9989...	75.0	[0..9]	[59..30]
gi\|54642569, gi\|... - gi\|54642569\|gb\|EAL31316.1\| GA15071 [Drosophila pseudoobscura pseudoobscura], gi\|125980478\|ref\|XP_001... gi\|195167751, gi... - gi\|195167751\|ref\|XP_002024696.1\| GL22482 [Drosophila persimilis], gi\|194108101\|gb\|EDW30144.1\| GL2248... gi\|125980478\|ref... - GA15071-PA [Drosophila pseudoobscura], GA15071 [Drosophila pseudoobscura pseudoobscura]	74.0	[0..4]	[56..52]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLTPAFRLS PSLLPWNFSR GFKVKASVKK RCSSCYFVRR KGRLYVLCKK HPRHKTRQG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.469	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.418	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.367	b.34.2	SH3-domain
View	Download	0.360	g.3.7	Scorpion toxin-like
View	Download	0.353	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.351	b.34.2	SH3-domain
View	Download	0.341	d.58.1	4Fe-4S ferredoxins
View	Download	0.332	b.34.2	SH3-domain
View	Download	0.316	g.59.1	Zinc-binding domain of translation initiation factor 2 beta

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits