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View Structure Prediction Details

Protein: sec231
Organism: Schizosaccharomyces pombe
Length: 759 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec231.

Description E-value Query
Range
Subject
Range
gi|73991096, gi|... - gi|73991096|ref|XP_857053.1| PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 10 [Canis...
1093.0 [0..3] [759..8]
gi|62645966, gi|... - gi|62645966|ref|XP_342532.2| PREDICTED: similar to Protein transport protein Sec23B (SEC23-related p...
1089.0 [0..3] [759..8]
SC23B_BOVIN - Protein transport protein Sec23B OS=Bos taurus GN=SEC23B PE=2 SV=1
1088.0 [0..3] [759..8]
gi|74198589 - gi|74198589|dbj|BAE39773.1| unnamed protein product [Mus musculus]
1088.0 [0..3] [759..8]
SEC23B - Sec23 homolog B (S. cerevisiae)
1088.0 [0..3] [759..8]

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Predicted Domain #1
Region A:
Residues: [1-759]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFEEIEERD GVRFTWNVFP STRIESSRTI VPIASIYKPL NERPDLPPVL YEPVTCKAPC  60
   61 KAVLNPYCHI DTRAKFWICP FCLQRNMLPP QYKDISNTSL PIELLPEYST IEYTLPRPPQ 120
  121 LTPVFLFVVD VCQDEENLQA LKDSLIISLS LLPPECLVGL VTFGTMVDVY ELGYTECSKS 180
  181 YVFRGSKDYT SKQIQEMLGL PTSNVSPVAL QQARSFQGSA APSRFLLPIQ QCEFQLTNIL 240
  241 EQLQPDSWPV ANDRRPQRCT GTALNISVSM MESVCPNSGG HIMLFAGGPS TVGPGTVVST 300
  301 ELREPIRSHH DIERDQAKHV KKALRFYEGL TKRVSANGHA VDILAGCLDQ IGIMEMKSLA 360
  361 SSTGGYLVLS DSFTTSIFKQ SFQRIFGRDS LNNMLLGFNA TMEVLTTKEL KISGLIGHAV 420
  421 SLNKKSQNVG DIEIGLGNTN SWKMCGISPK STYAIYFEVA TQSASAPQGD SRGLVQYLTL 480
  481 YQHSSNTFRL RVTTVARAFA DGGSPLIVNS FDQEAAAVAM ARIAAFKAEV DDGPDVLRWT 540
  541 DRMLIKLCQK FAEYRKDDPS SFRLSSQFTL YPQFMYYLRR SPFLQVFNNS PDETAFYRHM 600
  601 LNHEDVNNSL IMIQPTLQSF SFEHPGGVPV LLDAVSVKPD VILLLDTFFH ILIFHGDTIA 660
  661 QWRNAGYQNQ PEYQNLKELL EAPRVEAAEL LIDRFPIPRF IVCDQGGSQA RFLLSRLNPS 720
  721 ETHNTTSMYG APPAHAILTD DVSLQTFMSH LKKLAVAVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nupA
Description: No description for 2nupA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle