YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC550.07
Organism:	Schizosaccharomyces pombe
Length:	533 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC550.07.

Description	E-value	Query Range	Subject Range
GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 364... GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1	470.0	[0..54]	[531..2]
GATA_PELCD - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1...	464.0	[0..55]	[532..3]
GATA1_CLOAB - Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM... GATA1_CLOAB, GAA... - Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum GN=gatA1 PE=3 SV=1, (Q...	462.0	[0..57]	[531..5]
GATA_GEOKA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus kaustophilus (strain HTA426) GN=gatA PE... GATA_GEOKA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus kaustophilus GN=gatA PE=3 SV=1	461.0	[0..58]	[532..6]
GATA_METBF - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN...	460.0	[0..54]	[531..1]
gi\|95132536, gi\|... - gi\|95931418\|ref\|ZP_01314126.1\| glutamyl-tRNA(Gln) amidotransferase, A subunit [Desulfuromonas acetox...	460.0	[0..55]	[532..3]
GATA_GEOSE - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus stearothermophilus GN=gatA PE=3 SV=1	459.0	[0..58]	[532..6]
GATA_DEHMC - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides mccartyi (strain CBDB1) GN=gatA PE=...	458.0	[0..54]	[530..3]
GATA_GEOUR - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter uraniireducens (strain Rf4) GN=gatA PE=3 ...	457.0	[0..54]	[531..2]
GATA_METAC - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1 GATA_METAC - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM...	455.0	[0..54]	[531..2]

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Predicted Domain #1

Region A:
Residues: [1-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIDWRQIAA KYCAHRDGSI PEPFKIKTLP KDTVLNVTKI PSECGLLTPK EIELTEKYDA  60
   61 TALAEMIKDR KVTSVELVTA FCKRAAIAQQ LVNCVNELFY EEALARAAEL DEYYAKTGSL 120
  121 VGPLHGVPVS VKEHISIKNH TATASFLAKA NIIAEKDSDL VATVRKAGAV FYCRTPQPQA 180
  181 IMHLETSSNL TGVTVNPFNR KLTPGGSSGG EGALLGIKAS VLGIGSDIGG SIRSPAANNG 240
  241 LFGLRPSTLR LSRKGCQGAV SGQETILGVV GPLGRSVRDM NLFMKACIDS QPWLDDASLL 300
  301 PMPWRSVAPP KTLKVGIMRS DNVVNPQPPV ARAMQMAIDQ LSKNPDFDLV DVEPLDHKYS 360
  361 WDLISEMYWL DGGKVYYDLF NKVGEPILPL TEWIMHQPNV KPHDITAVWK LTAARDEYRN 420
  421 RYLKHLQAYG VDVLLTPVGP SPAPKLGEAK YWTYTSVWNL LDLPAVVFPV TTVDPKLDVK 480
  481 DESYIPMNEQ DAANYETYSP EDYLDAPVSL QLVGKRWQDE ELLAALDKIV SML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.69897
Match:	1mt5A
Description:	Fatty acid amide hydrolase (oleamide hydrolase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity	3.16753436373904	bayes_pls_golite062009
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.35558934074841	bayes_pls_golite062009
binding	1.28402853755417	bayes_pls_golite062009
catalytic activity	0.906509857495572	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.301483171038292	bayes_pls_golite062009
fatty acid amide hydrolase activity	0.287356797444323	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: