YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC27B12.09c
Organism:	Schizosaccharomyces pombe
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC27B12.09c.

Description	E-value	Query Range	Subject Range
gi\|114674911 - gi\|114674911\|ref\|XP_524071.2\| PREDICTED: solute carrier family 25, member 23 [Pan troglodytes]	263.0	[0..2]	[269..368]
gi\|33598954 - gi\|33598954\|ref\|NP_037518.2\| solute carrier family 25 member 24 isoform 1 [Homo sapiens]	259.0	[0..2]	[269..196]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	258.0	[0..2]	[269..177]
gi\|76672942 - gi\|76672942\|ref\|XP_877743.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 1 isof...	257.0	[0..2]	[269..196]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQAIAGLAA GTASTLIMHP LDLAKIQMQA SMNQDSKSLF QVFKSNIGSN GSIRSLYHGL  60
   61 SINVLGSAAS WGAYFCIYDF SKRVVMSMTP FNNGEISVLQ TLCSSGFAGC IVAALTNPIW 120
  121 VVKSRILSKR VNYTNPFFGF YDLIKNEGLR GCYAGFAPSL LGVSQGALQF MAYEKLKLWK 180
  181 QRRPTSLDYI FMSAASKVFA AVNMYPLLVI RTRLQVMRSP HRSIMNLVLQ TWRLQGILGF 240
  241 YKGFLPHLLR VVPQTCITFL VYEQVGMHFK TQSSKSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.30103
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits