YRC Public Data Repository - Protein Structure Prediction

Protein:	mcp1
Organism:	Schizosaccharomyces pombe
Length:	661 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mcp1.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	181.0	[0..4]	[451..2198]
gi\|114659016 - gi\|114659016\|ref\|XP_510600.2\| PREDICTED: protein regulator of cytokinesis 1 [Pan troglodytes]	170.0	[0..22]	[559..199]
gi\|14250231, gi\|... - ref\|NP_659210.1\| myosin, heavy polypeptide 2, skeletal muscle, adult [Mus musculus], gi\|14250231\|gb...	166.0	[0..4]	[391..1201]
gi\|47207986 - gi\|47207986\|emb\|CAF91457.1\| unnamed protein product [Tetraodon nigroviridis]	166.0	[0..4]	[474..1358]
MYH7_RAT - Myosin-7 OS=Rattus norvegicus GN=Myh7 PE=1 SV=2	162.0	[0..4]	[451..1194]
gi\|109113339 - gi\|109113339\|ref\|XP_001118262.1\| PREDICTED: myosin, heavy polypeptide 2, skeletal muscle, adult [Mac...	161.0	[0..4]	[420..953]
gi\|59544117, gi\|... - gi\|59544117\|gb\|AAW88310.1\| cardiac myosin heavy chain-alpha [Xenopus laevis], gi\|148229072\|ref\|NP_00...	160.0	[0..4]	[451..1191]
gi\|29727 - gi\|29727\|emb\|CAA37068.1\| cardiac beta myosin heavy chain [Homo sapiens]	160.0	[0..4]	[451..1194]

Back

Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELAKIGDRL NNYYNNIYTL SEKLGYSFTK ISFNNIILDA LSGHQRKLEI KIINIESKCN  60
   61 ELSSEISLLR KRLGIIEEIE IPRTLIDQYE CLVTYHNGIR AIYNTKKNEA KNMYKEIERL 120
  121 SVILGESVDE VNFVNGDFED ISDIKLEQLS AKLNELHQIY RLRKEKNIEI KEELKKLQDS 180
  181 LSIKLSMPAD DLSKNGIKHL IIYKEKLRFS LESRKSRVDE IVNEMKNMCG KNPTSELPTN 240
  241 YSDKTLTLWE NELSSMRKVY FVKYKTEYEF LQKRYLSLAR IMFVSKKEML FTSQFKEIPN 300
  301 VNRELIQSMK QEIGNLEVDL HLQGELNNMI RRYLLLESRV YKESQRMKVL SGSASQPFTL 360
  361 KRLQKDFQLL KAKLICALRE WEEDNEKKIY V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.221849
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [392-529]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGKPLSSRLL MIHSPPILQN QENISSNDNS KSSPESSPPA RKTTGKIENK KLRNIDVQSK  60
   61 KSIRFPLRLA SHEEPLIDRM VNQSPDTRSV SKSKRLVRET SSGCLFKNHS KSNTLSPRRK 120
  121 GSRHGPREPC LSPDASSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [530-661]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIPVTDIKEI LPSQHDTPHN SVKLTGSSTT PASVSLRQMI EPLLSRTPPK GEFTNSLDDT  60
   61 PTQSNVEKVD RFLENHDWET CSESSSASED QSLCKQLSSF SLSSSDISKK LKNNLNGLHF 120
  121 SSDEGSKLPT FL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits