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View Structure Prediction Details

Protein: SPCC338.06c
Organism: Schizosaccharomyces pombe
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC338.06c.

Description E-value Query
Range		 Subject
Range
gi|8671873 - gi|8671873|gb|AAF78436.1|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...
 145.0 [0..3] [138..262]
gi|224545 - gi|224545|prf||1107298A protein,small heat shock
 140.0 [0..3] [138..16]
gi|38639431 - gi|38639431|gb|AAR25848.1| 17.5 kDa class I heat shock protein [Carica papaya]
 139.0 [0..2] [138..15]
gi|41059801 - gi|41059801|gb|AAR99375.1| small heat shock protein [Prunus persica]
 138.0 [0..3] [138..14]
HS17A_ORYSJ - 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1
HSP23_ORYSA - 17.4 kDa class I heat shock protein 3 - Oryza sativa (Rice)
gi|125543232 - gi|125543232|gb|EAY89371.1| hypothetical protein OsI_10878 [Oryza sativa Indica Group]
 136.0 [0..3] [138..10]
gi|83701135 - gi|83701135|gb|ABC41131.1| 17.3 kDa class I heat shock protein [Arachis hypogaea]
 136.0 [0..2] [138..12]

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Predicted Domain #1
Region A:
Residues: [1-139] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFDAFTNGF MNDIFEFGDR SKFNRSAWLS CWGPALELRE TEDTIEVDVE VPGIDKQNLK  60
   61 VDLHGSKLTI SGERKKPEEE KAGPLIRWSE RCVGAFSRTI TLPQPVDEKL IHASLNNGIL 120
  121 SIVMKKKNPE FTTRIVEIQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 1gmeA
Description: Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.75188630383424 bayes_pls_golite062009
protein binding 0.803921783375731 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle