YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl2402
Organism:	Schizosaccharomyces pombe
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl2402.

Description	E-value	Query Range	Subject Range
gi\|76660704 - gi\|76660704\|ref\|XP_585396.2\| PREDICTED: similar to ribosomal protein L24-like [Bos taurus]	181.0	[0..1]	[108..122]
gi\|50729688 - gi\|50729688\|ref\|XP_416616.1\| PREDICTED: similar to Rpl24 protein [Gallus gallus]	174.0	[0..1]	[149..155]
gi\|82995895, gi\|... - gi\|82996540\|ref\|XP_916736.1\| PREDICTED: similar to ribosomal protein L24-like [Mus musculus], gi\|829...	169.0	[0..1]	[145..23]
gi\|109032847 - gi\|109032847\|ref\|XP_001097920.1\| PREDICTED: similar to ribosomal protein L24 isoform 1 [Macaca mulat...	166.0	[0..1]	[110..1]
gi\|15779001 - gi\|15779001\|gb\|AAH14576.1\| Ribosomal L24 domain containing 1 [Homo sapiens]	164.0	[0..1]	[145..1]
RLP24_PONPY - Probable ribosome biogenesis protein RLP24 - Pongo pygmaeus (Orangutan) RLP24_PONAB - Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1	164.0	[0..1]	[145..1]
RLP24_RAT - Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1	164.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVEVCSFSG SKVYPGAGRL FVRGDNKVFR FVNKKSESLF LQRKNPRRLS WTVLYRRMHK  60
   61 KGISEEHAKK RTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1s1iS
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [75-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVKHQRGIVG ANLDVIKEKR NQRPEVRAAA RAAALKQRKD KRAASESEKK AIKAKSAASS  60
   61 ARGQAIKNAK VAARR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits