YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCP20C8.01c
Organism:	Schizosaccharomyces pombe
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCP20C8.01c.

Description	E-value	Query Range	Subject Range
SPCC569.01c - DUF1773 family protein 5 YQO1_SCHPO - UPF0612 protein C569.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC569.01c PE=3 ...	119.0	[0..1]	[247..1]
RIMB1_RAT - Peripheral-type benzodiazepine receptor-associated protein 1 OS=Rattus norvegicus GN=Bzrap1 PE=1 SV=...	100.0	[0..36]	[241..311]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	100.0	[0..19]	[239..1904]
gi\|76647955 - gi\|76647955\|ref\|XP_584975.2\| PREDICTED: similar to CDC42-binding protein kinase beta [Bos taurus]	99.0	[0..17]	[241..686]
gi\|7513043 - gi\|7513043\|pir\|\|T00391 hypothetical protein KIAA0612 - human (fragment)	98.0	[0..54]	[241..211]
gi\|148231027, gi... - gi\|32364687\|gb\|AAP80383.1\| EH domain protein [Xenopus laevis], gi\|148231027\|ref\|NP_001084490.1\| EH d...	97.0	[0..36]	[247..380]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSNENFDND YNLPPPNDSA EDLKIFIKRY ERSVDSTLLE IDENKREALE KYIEERDRKM  60
   61 KYEIECNERL QGWKKLAIER EISEEQSGEV QFPRWIDEWA NTKLGGIFER IFSKMDSMQN 120
  121 DMNSRFDAMQ NEMNSRFDTV QNEMTSMKGE MAEMKVEMVE MKRETIRLNT RIDLLEQKTE 180
  181 ARFQSIEQRF NSIDQRFNSI DRRFDSMEQR LDSMDQKMET IDARSCRSIM LTRKLENTTR 240
  241 SDQGYLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits