YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1685.13
Organism:	Schizosaccharomyces pombe
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1685.13.

Description	E-value	Query Range	Subject Range
gi\|67901392, gi\|... - gi\|67901392\|ref\|XP_680952.1\| hypothetical protein AN7683.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	144.0	[0..10]	[183..6]
NCE2_YEAST - Non-classical export protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCE102 PE... gi\|207340247 - gi\|207340247\|gb\|EDZ68657.1\| YPR149Wp-like protein [Saccharomyces cerevisiae AWRI1631] NCE102 - Protein of unknown function; contains transmembrane domains; involved in secretion of proteins that ... gi\|151942921 - gi\|151942921\|gb\|EDN61267.1\| nonclassical export-related protein [Saccharomyces cerevisiae YJM789] gi\|190408072 - gi\|190408072\|gb\|EDV11337.1\| non-classical export protein 2 [Saccharomyces cerevisiae RM11-1a]	141.0	[0..13]	[183..8]
gi\|145016628, gi... - gi\|39972281\|ref\|XP_367531.1\| hypothetical protein MGG_07442 [Magnaporthe grisea 70-15], gb\|EAA53165....	132.0	[0..8]	[178..14]
gi\|115433368, gi... - gi\|115433368\|ref\|XP_001216821.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	130.0	[0..10]	[183..6]
gi\|49528457 - gi\|49528457\|emb\|CAG62114.1\| unnamed protein product [Candida glabrata] gi\|50293465, gi\|... - gi\|50293465\|ref\|XP_449144.1\| unnamed protein product [Candida glabrata], gi\|49528457\|emb\|CAG62114.1\|...	128.0	[0..13]	[183..8]
gi\|66846925, gi\|... - gi\|70988885\|ref\|XP_749294.1\| non-classical export protein Nce102 [Aspergillus fumigatus Af293], gi\|6... gi\|159128708 - gi\|159128708\|gb\|EDP53822.1\| non-classical export protein Nce2, putative [Aspergillus fumigatus A1163...	125.0	[0..10]	[183..6]

Back

Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGIRQYGVF TWVFRTFQLA IDTIVLALAS ALVNQQTSGG SPGKINFSVA VGSFAILTFF  60
   61 LTAVGRFLPT ILGNPWLIAF YDFVNWVFAL TGGCCIAVAI RVHACDNQKY LDRNHYTQGS 120
  121 MRRCQELKAL CFFLWFMFGL YVASFIVQIF IAKNDTPNYT FRGRGRGKGS GPAVAPRPVM 180
  181 SAV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits