YRC Public Data Repository - Protein Structure Prediction

Protein:	rft1
Organism:	Schizosaccharomyces pombe
Length:	527 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rft1.

Description	E-value	Query Range	Subject Range
gi\|83364164, gi\|... - gi\|83374447\|ref\|ZP_00919219.1\| similar to Membrane protein involved in the export of O-antigen and t...	192.0	[0..6]	[522..279]
gi\|115937013, gi... - gi\|115937013\|ref\|XP_001183100.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	189.0	[0..5]	[472..7]
gi\|628539 - gi\|628539\|pir\|\|S40176 ExoT protein - Rhizobium meliloti	182.0	[0..9]	[497..8]
gi\|88176886, gi\|... - gi\|88176886\|gb\|EAQ84354.1\| hypothetical protein CHGG_08368 [Chaetomium globosum CBS 148.51], gi\|1162...	182.0	[0..48]	[514..470]
RFT1_YEAST - Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ... gi\|151946375 - gi\|151946375\|gb\|EDN64597.1\| Flippase [Saccharomyces cerevisiae YJM789] RFT1 - Essential integral membrane protein that is required for translocation of Man5GlcNac2-PP-Dol from th... gi\|207347829 - gi\|207347829\|gb\|EDZ73882.1\| YBL020Wp-like protein [Saccharomyces cerevisiae AWRI1631]	182.0	[0..2]	[517..10]
gi\|13474395, gi\|... - gi\|14025148\|dbj\|BAB51749.1\| probable succinoglycan transport protein [Mesorhizobium loti MAFF303099]...	176.0	[0..6]	[520..75]
gi\|66767990, gi\|... - gi\|66767990\|ref\|YP_242752.1\| GumJ protein [Xanthomonas campestris pv. campestris str. 8004], gi\|6657... gi\|21231882, gi\|... - gi\|21231882\|ref\|NP_637799.1\| GumJ protein [Xanthomonas campestris pv. campestris str. ATCC 33913], g...	168.0	[0..5]	[515..16]
gi\|16264377, gi\|... - gi\|16264377\|ref\|NP_437169.1\| putative PST type surface saccharide translocase, ExoT protein [Sinorhi... gi\|25503114 - pir\|\|E95920 probable PST type surface saccharide translocase, similar to ExoT protein [imported] - S...	164.0	[0..6]	[522..39]
gi\|2120732, gi\|7... - gi\|733151\|gb\|AAA86378.1\| GumJ [Xanthomonas campestris], pir\|\|S67859 GumJ protein - Xanthomonas campe...	164.0	[0..5]	[515..16]
gi\|38260621 - gi\|38260621\|gb\|AAR15439.1\| nuclear division RFT1-like protein [Sisymbrium irio]	163.0	[0..47]	[506..3]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKSDSLLQS SSKGLRSSIF FQGSSRILTF FLNQLTIRLT SPSAYAFSSI HFEILQSTIL  60
   61 FLSRESVRLA MQRIPSENAI ITSTSTESNK SKKLSDQLQL IKNTSLISVY IGIVISLLVS 120
  121 LFYFYSLPNF PYSKTCIFIY TVSSFIELLS EPYYEVLQWR QKFSKTASAE GLGTIICSLL 180
  181 SFAISVLGRN KAPSSLPFAL GNLSEKVTIF FTLRYFAKQP FSIFLHK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [228-527]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGENERYIFW DSSTLRIICS HTYQVLLKHL ITKGDKIMVA WYASPSAQGP YALASNYGSL  60
   61 LARIVFRPVE DHSHIVFAQL THYKNKKDEK KALNLLAWIL KLYSYMSLFI LFGSNYSDIV 120
  121 LLFGAGSKWA SPDSSSILSW YAMYIPFMAA NGVLEAFYVS AANSSQLYDQ GKCYLASAVF 180
  181 YFITGKFLLS WFNLGSHGLI LANILNLSLR ICFALRFILH NYKDFSLPRS LPRPFLLALS 240
  241 ILLSIISSFL VKHWRESKVP FLVYFLSAPS LAILYSCFII LVDKDVRGYA KILLSKYYIK 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits