YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC144.12
Organism:	Schizosaccharomyces pombe
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC144.12.

Description	E-value	Query Range	Subject Range
gi\|21244136, gi\|... - ref\|NP_643718.1\| ribose-5-phosphate isomerase A [Xanthomonas axonopodis pv. citri str. 306], gi\|211...	308.0	[0..1]	[234..4]
ENSMMUT000000129... - null, null gi\|114578714 - gi\|114578714\|ref\|XP_525809.2\| PREDICTED: ribose 5-phosphate isomerase A (ribose 5-phosphate epimeras...	306.0	[0..10]	[244..75]
RPIA - ribose 5-phosphate isomerase A	306.0	[0..10]	[244..75]
gi\|55250104, gi\|... - gi\|55925229\|ref\|NP_001007290.1\| ribose 5-phosphate isomerase A [Danio rerio], gi\|55250104\|gb\|AAH8554...	303.0	[0..14]	[239..43]
gi\|53136558, gi\|... - gi\|71896441\|ref\|NP_001026341.1\| ribose 5-phosphate isomerase A [Gallus gallus], gi\|53136558\|emb\|CAG3...	300.0	[0..14]	[244..3]
gi\|81299395, gi\|... - gi\|81299395\|ref\|YP_399603.1\| ribose-5-phosphate isomerase A [Synechococcus elongatus PCC 7942], gi\|8... gi\|56685907, gi\|... - gi\|56750948\|ref\|YP_171649.1\| ribose-5-phosphate isomerase A [Synechococcus elongatus PCC 6301], gi\|5...	299.0	[0..6]	[239..6]
RPIA_MOUSE - Ribose-5-phosphate isomerase OS=Mus musculus GN=Rpia PE=1 SV=2	299.0	[0..10]	[244..68]
gi\|58425344 - gi\|58425344\|gb\|AAW74381.1\| ribose-5-phosphate isomerase A [Xanthomonas oryzae pv. oryzae KACC10331]	298.0	[0..3]	[234..20]
gi\|109473646, gi... - gi\|62647453\|ref\|XP_342708.2\| PREDICTED: similar to Ribose-5-phosphate isomerase (Phosphoriboisomeras...	298.0	[0..10]	[244..68]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSAEKKLDL SPIELAKRLA CHMAVDENYP ENPKVIGIGS GSTVVYVVER LLTKPGVDSV  60
   61 VFIPTGFQSK QLIVNNGLRL GDPDCYPNVD VSFDGADEVD DNLQCIKGGG ACLFQEKLIA 120
  121 FLAKRLVIVA DSRKNSHVLG EYWKKGVPIE VMPMAYASIL PQLVELGAIE PKLRMGAPGK 180
  181 AGPVVTDNGN FIIDAHFGLI KNPKELFAKI KLLVGVVEVG LFCDMISAVY FGSKDGSVTV 240
  241 KKASGEKHII PAPVTAAANE VDAKVAETNA KPLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	1xtzA
Description:	Crystal structure of the S. cerevisiae D-ribose-5-phosphate isomerase: comparison with the archeal and bacterial enzymes
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits