| Protein: | SPBC17D11.04c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 767 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC17D11.04c.
| Description | E-value | Query Range |
Subject Range |
|
|
380.0 | [0..4] | [765..86] |
|
|
377.0 | [0..5] | [765..87] |
|
|
377.0 | [0..4] | [765..86] |
|
|
374.0 | [0..4] | [765..86] |
|
|
373.0 | [0..4] | [765..191] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MQTFRLTSTG RNILRPDELA FQPREEIPYK SFHPDLQIDE PLEILEGDHT QYAGLRDSLV 60
61 TYKSENSYVL KALLNAKIEN VKPVGVQTEN INPQEKKFGY KTAKQLDWSP DEYFKFVAIH 120
121 PYSKTSFPVS YD
|
| Detection Method: |  |
| Confidence: | 8.522879 |
| Match: | 2jrzA |
| Description: | No description for 2jrzA was found. |
|
Region A: Residues: [133-414] |
1 11 21 31 41 51
| | | | | |
1 LDELDTMWLT YYNEFQLSSN SEWENVSKEF LEIVLTIIER EWLYLEAWMP KIEPVRVEDE 60
61 LDGRCVICNE AECENSNAIV FCDNCNTSVH QNCYGIPFVP EGQWFCKKCL LAPHEVICCA 120
121 FCPDRDGAFC TTLDGRWCHT ICAIAIPEIS FHDTSRLDLV RNIASIPKSR WKLVCCICKL 180
181 RWGTCVQCSD KNCYAAYHIT CARRAGFFYK IYSHSASYDS VDMETYCDKH TPPDYLNGLM 240
241 KRLFPLAELY YKRMATDVPL NFQATKAPDF VPEGPWKSHP LP
|
| Detection Method: | |
| Confidence: | 9.30103 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [415-620] |
1 11 21 31 41 51
| | | | | |
1 AFIVDKVTKV LLSYNVKRQD LPSIVTDICK FYHMKRRSRK DAPLLKSQLL MDSLENLPVR 60
61 ASKDRVRSLE VAKALQDQYQ SLLTLVESTA KRQLLKCQLS NLRKKFLNLN YFPAQRLLQD 120
121 TLVKIIDLDV DGLFNMPLDN GWIGWVELKR QVFSYQIGSI SSLEKKLEPI WDVDGVIQCI 180
181 DDMEQLTAMV QFAQKTEGEV KKLFIK
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1eqfA |
| Description: | TAFII250 double bromodomain module |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [621-767] |
1 11 21 31 41 51
| | | | | |
1 AKIYFESLSL DERGNLKVPS LGINGLEYDN WPGLNELEMS QLDIPSQGNL KSLHDFIEGL 60
61 DLNEKIGKFP ISMFQNQVAQ FSTIEIPKMS GRANGMHNFH SEDVTGQSNH ALPNSVTKKN 120
121 GTKQPYTKNS LPFNERITRS KAKKNYS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
