YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC4C3.07
Organism:	Schizosaccharomyces pombe
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC4C3.07.

Description	E-value	Query Range	Subject Range
gi\|114636591 - gi\|114636591\|ref\|XP_508270.2\| PREDICTED: hypothetical protein LOC451007 [Pan troglodytes]	295.0	[0..3]	[298..87]
gi\|62641108, gi\|... - gi\|62641108\|ref\|XP_215037.3\| PREDICTED: similar to eukaryotic translation initiation factor 3, subun...	289.0	[0..3]	[298..76]
gi\|21754858 - gi\|21754858\|dbj\|BAC04577.1\| unnamed protein product [Homo sapiens]	288.0	[0..3]	[298..61]
gi\|61369601, gi\|... - gi\|61369601\|gb\|AAX43358.1\| eukaryotic translation initiation factor 3 subunit 5 epsilon [synthetic c...	288.0	[0..3]	[301..68]
gi\|109107398 - gi\|109107398\|ref\|XP_001105893.1\| PREDICTED: similar to eukaryotic translation initiation factor 3, s... EIF3F_MACFA - Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1	287.0	[0..3]	[298..72]
gi\|61816288 - gi\|61816288\|ref\|XP_591540.1\| PREDICTED: similar to translation initiation factor 3 47 kDa subunit is...	287.0	[0..3]	[298..84]
gi\|157908 - gi\|157908\|gb\|AAA28695.1\| Mov34	286.0	[0..14]	[299..2]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGTKHVLH LTKPSSRSSP LNIVIEPAVL FSILDHSTRK SENNQRVIGT LLGTRSEDGR  60
   61 EIEIKSCFAV PHNESSEQVE VEMEYHRAMY HLHLKANPRE VVVGWYATSP DLDAFSALIQ 120
  121 NLYASPAEPG TAPLGTYPHP CVHLTVNTDV SSPLAIKTYV SSPVGITERL ADSCAFVPTP 180
  181 FTIRDDEAVR SGLKAVAAPK NDPSRLASLF TDLQQLRRST LELLSMIERV SDYVQNVID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [240-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSPANVAVG RYLMKCFSLI PCVEGQDFEK IFSSHLQDVL VVVYLANTLR TQVDIASRLN  60
   61 LLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits