YRC Public Data Repository - Protein Structure Prediction

Protein:	hut1
Organism:	Schizosaccharomyces pombe
Length:	322 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hut1.

Description	E-value	Query Range	Subject Range
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	132.0	[0..30]	[308..422]
gi\|109504832 - gi\|109504832\|ref\|XP_225253.4\| PREDICTED: similar to solute carrier family 35, member B3 [Rattus norv...	130.0	[0..4]	[313..265]
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	130.0	[0..7]	[318..320]
gi\|68555476, gi\|... - gi\|94309735\|ref\|YP_582945.1\| hypothetical protein Rmet_0790 [Ralstonia metallidurans CH34], gi\|93353...	125.0	[0..13]	[309..244]
gi\|114605867 - gi\|114605867\|ref\|XP_518230.2\| PREDICTED: solute carrier family 35, member B3 [Pan troglodytes]	125.0	[0..3]	[313..268]
gi\|85110407 - gi\|85110407\|ref\|XP_963444.1\| hypothetical protein NCU05453 [Neurospora crassa OR74A] gi\|32409655, gi\|... - gi\|32409655\|ref\|XP_325308.1\| related to SLY41 protein [MIPS] [Neurospora crassa], gi\|28925125\|gb\|EAA...	118.0	[0..11]	[319..131]
gi\|47939726 - gi\|47939726\|gb\|AAH72150.1\| LOC432208 protein [Xenopus laevis]	118.0	[0..7]	[320..138]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	117.0	[0..15]	[319..25]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFMRQLFV CMIGIYGSFL SWAVMQEKII TRPYDGERFS SPALLSLAQS FMTVLCGLLW  60
   61 NWFHGVSARG LLEPKFLGYF SSIAISASLS SYFGYASMFH LSYPTVILGK SCKLLPVIAL 120
  121 HVFVYKRKFP PHKYLIVTMI TAGVSIFSYF QNTSSKGKHA EH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.98
Match:	2i68A
Description:	No description for 2i68A was found.

Predicted Domain #2

Region A:
Residues: [163-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSPIGLLLLF FNLLMDGITN TTQDKVFGKY KLSSVTMMIA VNLGIACLNG LYLISPFCNQ  60
   61 QPLSFINRHP SILKDMLLFA CTGSVGQLFI FFTLEKFGSI TLVTITLTRK IFTMLLSVFH 120
  121 FHHTVSSIQW LGILLVFLGI SLEAGLKILN NNSTAKKKAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.154902
Match:	PF08449.2
Description:	No description for PF08449.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits