YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1919.02
Organism:	Schizosaccharomyces pombe
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1919.02.

Description	E-value	Query Range	Subject Range
PBN1_NEUCR - Protein pbn1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987... PBN1_NEUCR - Protein pbn-1 OS=Neurospora crassa GN=pbn-1 PE=3 SV=1	281.0	[0..108]	[327..242]
PBN1_GIBZE - Protein PBN1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PBN1 PE=3 ... PBN1_GIBZE - Protein PBN1 OS=Gibberella zeae GN=PBN1 PE=3 SV=1	272.0	[0..114]	[326..239]
gi\|49089302, gi\|... - gi\|67523569\|ref\|XP_659844.1\| hypothetical protein AN2240.2 [Aspergillus nidulans FGSC A4], ref\|XP_40... PBN1_EMENI - Protein pbn1 OS=Emericella nidulans GN=pbn1 PE=3 SV=1	266.0	[0..114]	[326..172]
gi\|38110626, gi\|... - gi\|39976771\|ref\|XP_369773.1\| hypothetical protein MGG_06288 [Magnaporthe grisea 70-15], gb\|EAA56317....	257.0	[0..114]	[327..249]
PBN1_ASPOR - Protein pbn1 OS=Aspergillus oryzae GN=pbn1 PE=3 SV=1 PBN1_ASPOR - Protein pbn1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pbn1 PE=3 SV=1	244.0	[0..114]	[326..282]
gi\|114188782, gi... - gi\|115438054\|ref\|XP_001217967.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	240.0	[0..53]	[326..132]
PBN1_ASPFU - Protein pbn1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pbn... PBN1_ASPFU - Protein pbn1 OS=Aspergillus fumigatus GN=pbn1 PE=3 SV=2	232.0	[0..114]	[326..219]
gi\|66851588, gi\|... - gi\|70998460\|ref\|XP_753952.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668515...	232.0	[0..114]	[326..330]
gi\|44985392 - gi\|44985392\|gb\|AAS54105.1\| AFR733Wp [Ashbya gossypii ATCC 10895] gi\|45199252, gi\|... - gi\|45199252\|ref\|NP_986281.1\| AFR733Wp [Ashbya gossypii ATCC 10895], gi\|44985392\|gb\|AAS54105.1\| AFR73...	228.0	[0..120]	[326..259]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQRTNQDT GTTTLFKVVI SNTVNYLPKG VWILRNNTID SLSIAKQFRE IKNNINISHL  60
   61 SRENYWVETP FGKVFHSEVV SEEFMQIFID KGNKALNNEE MIFACMSEKG WNVSLETVPN 120
  121 LDIPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSYETQLGLP VGLHPKLHVH LKNLHKPEDE CSLQGFMYIP PTLFIDRYEL SNIAEMHADN  60
   61 LGHVLGIWGE TDLEAPSYKL NGTGSFFWFD IYTDDGLLQK DYIDTIIPLH TRYQSPLKGQ 120
  121 TYLKTSLTNP KFFWNCDTED KVNDFRFLFS SKNKYTLQND PTTLSISIPI ADLSYKHVVE 180
  181 WVTNGVAIFS FFYLLLYLWK RFRYAKD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	100.886057
Match:	PF08320.3
Description:	No description for PF08320.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits