YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC336.13c
Organism:	Schizosaccharomyces pombe
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC336.13c.

Description	E-value	Query Range	Subject Range
gi\|186684006, gi... - gi\|23125131\|ref\|ZP_00107078.1\| COG0681: Signal peptidase I [Nostoc punctiforme PCC 73102], gi\|186684...	171.0	[0..2]	[161..8]
gi\|17230467, gi\|... - gi\|17230467\|ref\|NP_487015.1\| hypothetical protein alr2975 [Nostoc sp. PCC 7120], gi\|17132069\|dbj\|BAB... gi\|25327710 - pir\|\|AH2177 hypothetical protein alr2975 [imported] - Nostoc sp. (strain PCC 7120)	168.0	[0..2]	[161..8]
gi\|75700879, gi\|... - gi\|75907154\|ref\|YP_321450.1\| thylakoidal processing peptidase [Anabaena variabilis ATCC 29413], gi\|7...	167.0	[0..2]	[161..8]
gi\|120603303, gi... - gi\|120603303\|ref\|YP_967703.1\| signal peptidase I [Desulfovibrio vulgaris subsp. vulgaris DP4], gi\|12... gi\|241907381, gi... - gi\|241907381\|ref\|ZP_04791960.1\| signal peptidase I [Desulfovibrio vulgaris RCH1], gi\|241880367\|gb\|EE... gi\|46579117, gi\|... - gi\|46579117\|ref\|YP_009925.1\| signal peptidase I [Desulfovibrio vulgaris subsp. vulgaris str. Hildenb...	164.0	[0..12]	[166..4]
gi\|83572735, gi\|... - gi\|83589821\|ref\|YP_429830.1\| signal peptidase I [Moorella thermoacetica ATCC 39073], gi\|83572735\|gb\|...	161.0	[0..3]	[161..2]
gi\|46119422, gi\|... - gi\|67923384\|ref\|ZP_00516864.1\| Signal peptidase I [Crocosphaera watsonii WH 8501], gi\|67854765\|gb\|EA...	161.0	[0..3]	[162..10]
gi\|91709345, gi\|... - gi\|91775358\|ref\|YP_545114.1\| signal peptidase I [Methylobacillus flagellatus KT], gi\|91775214\|ref\|YP...	161.0	[0..15]	[161..38]
gi\|85860052, gi\|... - gi\|85860052\|ref\|YP_462254.1\| signal peptidase I [Syntrophus aciditrophicus SB], gi\|85723143\|gb\|ABC78...	160.0	[0..10]	[171..3]
gi\|78363364, gi\|... - gi\|78485078\|ref\|YP_391003.1\| peptidase S26A, signal peptidase I [Thiomicrospira crunogena XCL-2], gi...	159.0	[0..15]	[176..41]
gi\|67153332, gi\|... - gi\|67153332\|ref\|ZP_00415077.1\| Signal peptidase I [Azotobacter vinelandii AvOP], gi\|67087465\|gb\|EAM0... gi\|67153332 - gi\|67153332\|ref\|ZP_00415077.1\| Signal peptidase I [Azotobacter vinelandii AvOP]	159.0	[0..15]	[171..59]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANPFVRNQS FKSVFFKNLV GITLWVPVLM FVEQHVVSVG TIEGRSMKPA FNPETNMLQR  60
   61 DRVLLWKWNK DYKRGDVVIL RSPENPEELL VKRVLGVEYD IMKTRPPKKL SLVPVPEGHV 120
  121 WVEGDEQFHS IDSNKFGPVS TGLITAKVIA ILFPFSRAGR IDHEGFRKNA VFLSGKRSVK 180
  181

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Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits