YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1685.07c
Organism:	Schizosaccharomyces pombe
Length:	420 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1685.07c.

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	230.0	[0..9]	[374..967]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	222.0	[0..1]	[374..2461]
gi\|47221082 - gi\|47221082\|emb\|CAG12776.1\| unnamed protein product [Tetraodon nigroviridis]	206.0	[0..9]	[382..15]
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	196.0	[0..10]	[418..1096]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	195.0	[0..4]	[420..98]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	192.0	[0..6]	[418..69]
gi\|114663230 - gi\|114663230\|ref\|XP_001146701.1\| PREDICTED: solute carrier family 7 (cationic amino acid transporter...	192.0	[0..6]	[418..151]
gi\|50728916 - gi\|50728916\|ref\|XP_416343.1\| PREDICTED: similar to Cystine/glutamate transporter (Amino acid transpo...	192.0	[0..4]	[407..576]
gi\|54641913, gi\|... - gi\|54641913\|gb\|EAL30662.1\| GA20214-PA [Drosophila pseudoobscura], gi\|125978255\|ref\|XP_001353160.1\| G...	191.0	[0..6]	[375..19]

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Predicted Domain #1

Region A:
Residues: [1-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYSPLSSG PADVHIGKAG FFSSVINLAN TILGAGILSL PNAFTKTGLL FGCLTIVFSA  60
   61 FASFLGLYFV SQCAARLPRG KASFAAVAKH TFPSLAVVFD ASIAVKCFGV AVSYLVIVGD 120
  121 LMPQIAPSLG LSSPMFLRRQ TWIVFALFVL TPLSFLKRLD SLRHTSVISL IALCYLVFIV 180
  181 LYHFIIGDTV KGEIRYFVPE SGFGYLSVLP VFVFGFTCHQ NAFSVINEVR NFSQGFVNFT 240
  241 MFTAIISSTL LYLLVAITGY LSFGSLASGN IIAMYDNTSI WIIGGKLAIV VLVLFSYPLQ 300
  301 CHPCRNSVYQ AIRRSYSAHD MSDGYHAVIT LCILLFTHSL ALLLSSLEMV LAFVGSTGST 360
  361 FISFILPGSL YYFFSHKVAS PGNSSPLQLR ISRAFAAGLA IYGTVVMILC LNINIAKLSH 420
  421

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits