YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1A6.10
Organism:	Schizosaccharomyces pombe
Length:	485 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1A6.10.

Description	E-value	Query Range	Subject Range
gi\|44985800 - gi\|44985800\|gb\|AAS54424.1\| AGL066Wp [Ashbya gossypii ATCC 10895] gi\|44985800, gi\|... - gi\|45201030\|ref\|NP_986600.1\| AGL066Wp [Ashbya gossypii ATCC 10895], gi\|44985800\|gb\|AAS54424.1\| AGL06...	350.0	[0..47]	[484..7]
gi\|40741566, gi\|... - gi\|67537088\|ref\|XP_662318.1\| hypothetical protein AN4714.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	332.0	[0..24]	[484..9]
gi\|49643930 - gi\|49643930\|emb\|CAG99882.1\| KLLA0E18679p [Kluyveromyces lactis] gi\|49643930, gi\|... - gi\|50309567\|ref\|XP_454795.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643930\|emb\|CAG9988...	328.0	[0..92]	[484..51]
gi\|145017326, gi... - gi\|86196569\|gb\|EAQ71207.1\| hypothetical protein MGCH7_ch7g614 [Magnaporthe grisea 70-15], gi\|3997077...	319.0	[0..21]	[484..6]
gi\|114191844, gi... - gi\|115398744\|ref\|XP_001214961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	318.0	[0..29]	[482..14]
gi\|83766276 - gi\|83766276\|dbj\|BAE56419.1\| unnamed protein product [Aspergillus oryzae] gi\|220701699, gi... - gi\|238484821\|ref\|XP_002373649.1\| ThiF domain protein, putative [Aspergillus flavus NRRL3357], gi\|220... gi\|169767900 - gi\|169767900\|ref\|XP_001818421.1\| hypothetical protein [Aspergillus oryzae RIB40]	316.0	[0..29]	[484..14]
gi\|222526984, gi... - gi\|222526984\|ref\|YP_002571455.1\| UBA/THIF-type NAD/FAD binding protein [Chloroflexus sp. Y-400-fl], ... gi\|53796678 - ref\|ZP_00020762.2\| COG0476: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine bi... gi\|163849021, gi... - gi\|76258733\|ref\|ZP_00766387.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Chlorofl...	308.0	[0..94]	[469..1]
gi\|85074755 - gi\|85074755\|ref\|XP_965745.1\| hypothetical protein NCU00605 [Neurospora crassa OR74A] gi\|28927558, gi\|... - gi\|38567303\|emb\|CAE76591.1\| conserved hypothetical protein [Neurospora crassa], gi\|32408609\|ref\|XP_3...	308.0	[0..30]	[484..15]
gi\|106891733, gi... - gi\|148654884\|ref\|YP_001275089.1\| UBA/THIF-type NAD/FAD binding protein [Roseiflexus sp. RS-1], gi\|14...	307.0	[0..94]	[472..1]
gi\|119183744, gi... - gi\|90301656\|gb\|EAS31287.1\| hypothetical protein CIMG_06766 [Coccidioides immitis RS], gi\|119183744\|r...	306.0	[0..26]	[482..11]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLQVEVFF LFDFTSIMAG FKVPSWITYK SFWIAVSSSV TTACVILGTL EFRKHRSIRR  60
   61 LQSMIVPEAG KSIQLSSSGV PIEIYDAGEE DEGISKGVP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDENLIREQL ARNYAFFGED GMERLRNSFV IVVGCGGVGS WVINMLARSG VQKIRIVDFD  60
   61 QVSLSSLNRH SIATLQDVGT PKTLAIKKAI KKFAPWIEVD ARNALFNPDS ADDLLSGNPD 120
  121 FVIDAIDNIQ TKVDLLSYCY NHKLPVIAST GSACKSDPTR VNIADISATS EDPLSRATRR 180
  181 RLRLLGIMEG IPVVFSTEKP DPRKASLLPL SEEEFEKGDV DELSALPEFR ARILPVIGPM 240
  241 PGIFGLTIAT YVLTSIAKYP MDPISTMTRP RLYEEAVKRL HAEARKAGVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.0
Match:	1jw9B
Description:	Molybdenum cofactor biosynthesis protein MoeB
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [390-485]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDKTFNASEM SYIIEEVYVG RSALPPHESQ KVTVVRWNPQ LPFDHTNLVA MTRNEARYHE  60
   61 DNVLAKNVDP STVYGKDVIE VVHSFLRRLR MWEMLY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.674	a.48.4	Description not found.
View	Download	0.518	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.475	a.118.1	ARM repeat
View	Download	0.475	a.118.21	Description not found.
View	Download	0.473	d.81.3	Description not found.
View	Download	0.435	a.29.16	Description not found.
View	Download	0.421	a.7.1	Spectrin repeat
View	Download	0.415	a.46.1	Methionine synthase domain
View	Download	0.406	a.158.1	F-box domain
View	Download	0.383	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits