YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21D10.07
Organism:	Schizosaccharomyces pombe
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21D10.07.

Description	E-value	Query Range	Subject Range
gi\|44981137, gi\|... - gi\|45185448\|ref\|NP_983165.1\| ABR216Wp [Ashbya gossypii ATCC 10895], gi\|44981137\|gb\|AAS50989.1\| ABR21... gi\|44981137 - gi\|44981137\|gb\|AAS50989.1\| ABR216Wp [Ashbya gossypii ATCC 10895]	105.0	[0..1]	[100..1]
gi\|151946336 - gi\|151946336\|gb\|EDN64558.1\| conserved protein [Saccharomyces cerevisiae YJM789] CMC2 - Protein of the mitochondrial intermembrane space with a role in respiratory chain complex assembly o... gi\|190408883 - gi\|190408883\|gb\|EDV12148.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] COXM2_YEAST - COX assembly mitochondrial protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CMC...	104.0	[0..1]	[104..1]
gi\|76639958 - gi\|76639958\|ref\|XP_870510.1\| PREDICTED: similar to UPF0287 protein DC13 [Bos taurus]	104.0	[0..1]	[75..234]
gi\|49084504, gi\|... - gi\|67516055\|ref\|XP_657913.1\| hypothetical protein AN0309.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	93.0	[0..1]	[74..1]
CE30625 - status:Confirmed UniProt:Q8MNU7 protein_id:AAM22045.1	92.0	[0..1]	[76..5]
gi\|85114381 - gi\|85114381\|ref\|XP_964685.1\| hypothetical protein NCU09250 [Neurospora crassa OR74A] gi\|32422397, gi\|... - gi\|38567001\|emb\|CAE76301.1\| conserved hypothetical protein [Neurospora crassa], gi\|32422397\|ref\|XP_3...	88.0	[0..1]	[78..1]
gi\|26378936 - gi\|26378936\|dbj\|BAC25407.1\| unnamed protein product [Mus musculus]	88.0	[0..1]	[73..5]
gi\|123979754, gi... - gi\|123994527\|gb\|ABM84865.1\| chromosome 16 open reading frame 61 [synthetic construct], gi\|123979754\|... C16orf61 - chromosome 16 open reading frame 61	86.0	[0..1]	[75..5]
gi\|159130492 - gi\|159130492\|gb\|EDP55605.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70990326, gi\|... - gi\|70990326\|ref\|XP_750012.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668476...	85.0	[0..11]	[79..74]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPHLDVNNQ KQCADLIRAL EECHKSFGKF FGECNTIKYE LKACLTKDRN DKARLNRENA  60
   61 RMRKKVIEEN RKKEEIEERI LTDRILQQER KKSHANEGAG DNNN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.744727
Match:	PF08583.1
Description:	No description for PF08583.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.953	N/A	N/A	a.60.9	lambda integrase-like, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits