YRC Public Data Repository - Protein Structure Prediction

Protein:	gpi16
Organism:	Schizosaccharomyces pombe
Length:	545 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpi16.

Description	E-value	Query Range	Subject Range
gi\|28921687, gi\|... - gi\|32410037\|ref\|XP_325499.1\| hypothetical protein [Neurospora crassa], gi\|28921687\|gb\|EAA30969.1\| hy... gi\|85096134 - gi\|85096134\|ref\|XP_960205.1\| hypothetical protein NCU05644 [Neurospora crassa OR74A]	714.0	[0..13]	[539..22]
gi\|38103285, gi\|... - gi\|39943496\|ref\|XP_361285.1\| hypothetical protein MGG_03759 [Magnaporthe grisea 70-15], gb\|EAA50000....	712.0	[0..27]	[542..17]
gi\|49088100, gi\|... - gi\|67522637\|ref\|XP_659379.1\| hypothetical protein AN1775.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	702.0	[0..8]	[545..3]
gi\|46110619, gi\|... - gi\|46110619\|ref\|XP_382367.1\| hypothetical protein FG02191.1 [Gibberella zeae PH-1], gi\|42546283\|gb\|E...	690.0	[0..10]	[539..5]
gi\|88177949, gi\|... - gi\|88177949\|gb\|EAQ85417.1\| hypothetical protein CHGG_09431 [Chaetomium globosum CBS 148.51], gi\|1162...	681.0	[0..12]	[545..13]
gi\|44983050, gi\|... - gi\|45188206\|ref\|NP_984429.1\| ADR333Cp [Ashbya gossypii ATCC 10895], gi\|44983050\|gb\|AAS52253.1\| ADR33... gi\|44983050 - gi\|44983050\|gb\|AAS52253.1\| ADR333Cp [Ashbya gossypii ATCC 10895]	666.0	[0..16]	[543..72]
gi\|84569994 - gi\|84569994\|gb\|AAI10893.1\| PIGT protein [Homo sapiens]	661.0	[0..16]	[537..17]
gi\|114682193 - gi\|114682193\|ref\|XP_001155795.1\| PREDICTED: phosphatidylinositol glycan anchor biosynthesis, class T...	657.0	[0..18]	[537..20]

Back

Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNGCLLLF AYSLLSFSLT AATIDETYDE SLFIKSFSSR YSYVSFAFEI GASTDSTHSS  60
   61 VFSESSFSLF PLSIARVMDE CQVSELHIRA TRGRWDYENW KESPDNGFYS GGLGFEVWAF 120
  121 MANDPSMKYW LKLTNQLSGL LCASLNYIDS SNTYQPQLSY PGSFSFSNN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [170-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQYFASLPQE DVCTENLSPL FKLLPCKRKA GIASLLDSHL FFDTDWHSFS IDVYPSENQS  60
   61 LASVKMGIII QAVVDVERNG RRKGKTTFQP PSEYCHDEDM DSLHCLMSGY S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [281-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEHHTVDDLF HKVPKERCLL SSTFSDVFVS NGDKIDTFSL DEAANIQIPI QSTSDNHTVT  60
   61 VDRSLSNDGN HWGSLSSTIY NPSSSPRTIV YFEKFPWFVR VYLHTLTITL NGTRINTKDF 120
  121 IEKLYYQPLR DRKAGTMMEI QFSIPPHTNL IVHFNVEKTP LRLDEYPPD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [450-545]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANRGYNLPPA IISVFDENNT KLCSLRTAAL LMFIPTPDFS MPYNVIIFTS TVIALTFGGI  60
   61 FNLLTRRFVP QQSKFQNRQP SMLQRLKEKI FHKKRG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits