YRC Public Data Repository - Protein Structure Prediction

Protein:	rpp0
Organism:	Schizosaccharomyces pombe
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpp0.

Description	E-value	Query Range	Subject Range
gi\|27503344, gi\|... - gi\|27503344\|gb\|AAH42268.1\| Arbp-prov protein [Xenopus laevis], gi\|147904649\|ref\|NP_001080134.1\| acid...	386.0	[0..5]	[312..7]
gi\|45360787, gi\|... - gi\|45360787\|ref\|NP_989067.1\| acidic ribosomal phosphoprotein P0 [Xenopus (Silurana) tropicalis], gi\|...	376.0	[0..5]	[312..7]
gi\|149720539, gi... - gi\|149720543\|ref\|XP_001489380.1\| PREDICTED: similar to ribosomal phosphoprotein large PO subunit iso... tr\|M3WIQ1\|M3WIQ1... - 60S acidic ribosomal protein P0 OS=Felis catus GN=RPLP0 PE=3 SV=1 gi\|73994687, gi\|... - gi\|74003925\|ref\|XP_858251.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform 7 ...	365.0	[0..5]	[312..7]
gi\|62896495 - gi\|62896495\|dbj\|BAD96188.1\| ribosomal protein P0 variant [Homo sapiens]	364.0	[0..5]	[312..7]
RLA0_BOVIN - 60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3	364.0	[0..5]	[312..7]
gi\|71138 - pir\|\|R5RT10 acidic ribosomal protein P0, cytosolic [similarity] - rat gi\|57708, gi\|228176 - gi\|57708\|emb\|CAA33199.1\| unnamed protein product [Rattus rattus], gi\|228176\|prf\|\|1718187A ribosomal ...	363.0	[0..5]	[312..7]
gi\|114577027 - gi\|114577027\|ref\|XP_001168269.1\| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isofor...	362.0	[0..5]	[312..7]
RLA0_DANRE - 60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1	362.0	[0..5]	[312..7]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISKESKAQ YFEKLRSLFE KYNSLFVVNI DNVSSQQMHT VRKQLRGTAE LIMGKNTMIR  60
   61 RAMRGIINDM PELERLLPVV RGNVGFVFTN ADLKEVRETI IANVIAAPAR PNAIAPLDVF 120
  121 VPAGNTGMEP GKTSFFQALG IPTKITRGTI EITSDVHLVS KDAKVGPSEA TLLNMLNISP 180
  181 FTYGMDVLTI YDQGNVFSPE ILDVSEEDLI GHLLSAASII TAISLGANYP TILSVMHSVV 240
  241 NAYKNLVAVS LATEYTFEGT EQTKAFLADP SAFVVAAAPA AAAGGEAEAP AAEAAAEEEE 300
  301 ESDEDMGFGL FD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.69897
Match:	1jj2G
Description:	Ribosomal protein L10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits