YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21C3.10c
Organism:	Schizosaccharomyces pombe
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21C3.10c.

Description	E-value	Query Range	Subject Range
gi\|42739153, gi\|... - gi\|42783225\|ref\|NP_980472.1\| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987], gi\|4...	214.0	[0..1]	[263..132]
gi\|51974855, gi\|... - gi\|52141386\|ref\|YP_085445.1\| riboflavin biosynthesis protein [Bacillus cereus E33L], gi\|51974855\|gb\|...	213.0	[0..3]	[263..134]
gi\|254683878 - gi\|254683878\|ref\|ZP_05147738.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CNEVA-... gi\|229603428, gi... - gi\|229603428\|ref\|YP_002868410.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0248... gi\|227005412, gi... - gi\|227816888\|ref\|YP_002816897.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC 6... gi\|254754105 - gi\|254754105\|ref\|ZP_05206140.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Vollum... gi\|218905249, gi... - gi\|218905249\|ref\|YP_002453083.1\| riboflavin biosynthesis protein RibD [Bacillus cereus AH820], gi\|21... gi\|254744115 - gi\|254744115\|ref\|ZP_05201798.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Kruger... gi\|196035025, gi... - gi\|196035025\|ref\|ZP_03102432.1\| riboflavin biosynthesis protein RibD [Bacillus cereus W], gi\|1959925... gi\|254736225 - gi\|254736225\|ref\|ZP_05193931.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Wester... gi\|190563130, gi... - gi\|190566211\|ref\|ZP_03019130.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis Tsiankovski... gi\|254721713 - gi\|254721713\|ref\|ZP_05183502.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A1055] gi\|172081993, gi... - gi\|177652658\|ref\|ZP_02935074.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0174]... gi\|170129205, gi... - gi\|170705665\|ref\|ZP_02896128.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0389]... gi\|170668726, gi... - gi\|170687109\|ref\|ZP_02878327.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0465]... gi\|167512461, gi... - gi\|167639402\|ref\|ZP_02397673.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0193]... gi\|254758204 - gi\|254758204\|ref\|ZP_05210231.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Austra... gi\|167531112, gi... - gi\|167633706\|ref\|ZP_02392030.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0442]... gi\|164713053, gi... - gi\|165871134\|ref\|ZP_02215784.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0488]... gi\|47504776, gi\|... - gi\|47529628\|ref\|YP_020977.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames Anc... gi\|30264187, gi\|... - gi\|30264187\|ref\|NP_846564.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames], gi... gi\|49187016, gi\|... - gi\|49187016\|ref\|YP_030268.1\| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Sterne], ...	212.0	[0..3]	[263..134]
gi\|49331895, gi\|... - gi\|49480339\|ref\|YP_038170.1\| riboflavin biosynthesis protein [Bacillus thuringiensis serovar konkuki...	211.0	[0..3]	[263..134]
gi\|47568170, gi\|... - gi\|47568170\|ref\|ZP_00238874.1\| riboflavin biosynthesis protein RibD [Bacillus cereus G9241], gi\|4755...	211.0	[0..3]	[263..134]
gi\|65321502, gi\|... - gi\|65321502\|ref\|ZP_00394461.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Bacillus anth...	210.0	[0..3]	[263..134]
gi\|125712853, gi... - gi\|67874096\|ref\|ZP_00504001.1\| bifunctional deaminase-reductase, C-terminal:Riboflavin biosynthesis ...	210.0	[0..1]	[250..133]
gi\|228653996, gi... - gi\|229129391\|ref\|ZP_04258362.1\| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4], gi... gi\|228671967, gi... - gi\|229111585\|ref\|ZP_04241136.1\| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15], gi\|... gi\|228799401, gi... - gi\|228960377\|ref\|ZP_04122030.1\| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar... gi\|29897753, gi\|... - gi\|30022196\|ref\|NP_833827.1\| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ...	208.0	[0..3]	[263..143]
gi\|75761017, gi\|... - gi\|75761017\|ref\|ZP_00741020.1\| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5...	208.0	[0..3]	[263..48]
gi\|82775681, gi\|... - gi\|82775681\|ref\|YP_402028.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	208.0	[0..2]	[247..133]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSQAYFPP SANKKHVLLT WAQSINGRIG YVVESPSLGQ LRLSSKESFV MTHLLRTKFD  60
   61 GIMVGSRTAE NDNPSLTAKL PDPANPDCLL PLNKQPIPII VDSNLRLDYA SLKVIRLARE 120
  121 RLGKPPLIIV APSIWQQVQH DSKLKEAVKL IQSVGGRCII RNEDSPDSWS DYVALDKLLQ 180
  181 NGVNRIMVEG GAELLAKAFG STDIDAYVVT IVPKIFSCSN TTEIKNLNNL NLTTNSHWYP 240
  241 CGPDVIFTNY SDEFYESYKS LLTNSDAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.221849
Match:	2g6vA
Description:	No description for 2g6vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits