YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC644.07
Organism:	Schizosaccharomyces pombe
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC644.07.

Description	E-value	Query Range	Subject Range
gi\|85714371, gi\|... - gi\|85714371\|ref\|ZP_01045359.1\| peptidase M41, FtsH [Nitrobacter sp. Nb-311A], gi\|85698818\|gb\|EAQ3668...	271.0	[0..97]	[449..44]
gi\|74421764, gi\|... - gi\|75676894\|ref\|YP_319315.1\| peptidase M41, FtsH [Nitrobacter winogradskyi Nb-255], gi\|74421764\|gb\|A...	271.0	[0..90]	[449..32]
gi\|114315948, gi... - gi\|114327774\|ref\|YP_744931.1\| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1], gi\|11...	270.0	[0..92]	[449..35]
ftsH - ftsH metalloprotease (cell division protein) FtsH 1229602:1231518 forward MW:69829 gi\|192289727, gi... - gi\|192289727\|ref\|YP_001990332.1\| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris TIE-...	270.0	[0..90]	[449..32]
gi\|91801860, gi\|... - gi\|92118966\|ref\|YP_578695.1\| ATP-dependent metalloprotease FtsH [Nitrobacter hamburgensis X14], gi\|9...	270.0	[0..89]	[449..31]
gi\|86748941, gi\|... - gi\|86748941\|ref\|YP_485437.1\| ATP-dependent metalloprotease FtsH [Rhodopseudomonas palustris HaA2], g...	268.0	[0..95]	[449..37]
gi\|75260106 - gi\|75260106\|ref\|ZP_00731384.1\| COG0465: ATP-dependent Zn proteases [Escherichia coli E22]	268.0	[0..88]	[449..20]
gi\|115520634, gi... - gi\|77740054\|ref\|ZP_00808543.1\| Peptidase M41, FtsH [Rhodopseudomonas palustris BisA53], gi\|77700135\|...	268.0	[0..95]	[449..37]
gi\|75239255 - gi\|75239255\|ref\|ZP_00723226.1\| COG0465: ATP-dependent Zn proteases [Escherichia coli E110019]	268.0	[0..88]	[449..12]
gi\|75240799 - gi\|75240799\|ref\|ZP_00724697.1\| COG0465: ATP-dependent Zn proteases [Escherichia coli F11]	268.0	[0..88]	[449..25]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNIGAADAA TSSGISGLLS GNSFLGAGIG LMGFGAGLAI LRRGLISGAS LVKRRMLVSV  60
   61 EIPSKEKSYN AFLHWMSTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1jbkA
Description:	ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [80-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKRYSNQLAV ESNRQLKMPQ NAREKPDKQV ANRIFSLVPG PGKHYIKYKK CWIQVERERS  60
   61 NRLQDLTTGT PWETITLTTL SRDRGIFSEL LLEAQKFMQS AQKNKTTIYT AWATEWKPFG 120
  121 HPRSKRMLSS VVLESNVKKM ITDDVHDFLR NSQWYDTRGI PYRRGYLLYG PPGSGKTSFL 180
  181 YALAGELDYD ICVLNLAEKG LTDDRLNHLL SNVPPKAVVL LEDVDSAFQG RERSGEVGFH 240
  241 ANVTFSGLLN ALDGVTSSDE RIIFMTTNHP EKLDPALVRP GRVDVKAYLG NATPEQVREM 300
  301 FTRFYGHSPE MADDLSDIVC PKNTSMASLQ GLFVMNKSSP ADAVDMAKEL PDNPPSTPFS 360
  361 FNVHRKSLSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits