YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: alp5
Organism: Schizosaccharomyces pombe
Length: 433 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alp5.

Description E-value Query
Range
Subject
Range
gi|109489498 - gi|109489498|ref|XP_001076100.1| PREDICTED: similar to Actin, cytoplasmic 2 (Gamma-actin) [Rattus no...
483.0 [0..9] [432..312]
gi|18565104 - gi|18565104|dbj|BAB84579.1| Actin 2 [Crassostrea gigas]
473.0 [0..7] [432..2]
gi|223855 - gi|223855|prf||1002250A actin
473.0 [0..8] [432..1]
gi|45269029 - gi|45269029|gb|AAS55927.1| cytoskeletal beta actin [Sus scrofa]
471.0 [0..8] [432..31]
gi|29293659 - gi|29293659|gb|AAO67718.1| beta actin [Engystomops pustulosus]
471.0 [0..8] [432..4]
gi|94373495 - gi|94373495|ref|XP_001052054.1| PREDICTED: actin, gamma, cytoplasmic 1 [Mus musculus]
471.0 [0..9] [432..30]
ACTA_PHYPO - (P02576) Actin, plasmodial isoform
470.0 [0..8] [432..2]
gi|224306 - gi|224306|prf||1101351C actin
470.0 [0..8] [432..1]

Back

Predicted Domain #1
Region A:
Residues: [1-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSAFYGGDE VSAIVIDPGS KWTRIGFSGE DIPKCVLPSY CGEFSDGRRL FGEEYIYKSN  60
   61 PGMEIKNAIR NGWVENWDVT VDLWRYGLEQ QLKTNPLEHP ILITEPFDNP PENRVKTLET 120
  121 MFESLRCPAT YLAKQETCAA FASGKGTACL VDIGAERSSV SAIYDGFVLQ KGYQVQHFSG 180
  181 NAINDILAQT LRDKNFEVMP KYLVKSKNPV EIGQPANCEL RPRDTTDSYH QFQVQRVYDE 240
  241 WKEECALISD VPFSSETTIA ESEFEFPDGS RMMFGAERYQ IPEHLFVPGS DEEMNEEPSK 300
  301 PIEQTENNEV SQQDSSVTNT SSRILGIPQL FQNCISECDV DIRASLLNNV IVCGGTSLMQ 360
  361 GFSLRLQNEL SKLYPGSRLK IHASGHVVER SYASWLGGSI LSSLGTFHQL WISRQEYEEH 420
  421 GSDRLALIEK RCK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 133.0
Match: 1hluA
Description: Actin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle