YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC13F5.05
Organism:	Schizosaccharomyces pombe
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC13F5.05.

Description	E-value	Query Range	Subject Range
gi\|114670980 - gi\|114670980\|ref\|XP_001164327.1\| PREDICTED: prolyl 4-hydroxylase, beta subunit isoform 5 [Pan troglo...	247.0	[0..23]	[358..16]
PDIA1_PONAB - Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1 PDIA1_PONPY - Protein disulfide-isomerase precursor - Pongo pygmaeus (Orangutan)	239.0	[0..2]	[358..1]
PDIA1_RABIT - Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1	237.0	[0..2]	[358..1]
gi\|35655 - gi\|35655\|emb\|CAA28775.1\| unnamed protein product [Homo sapiens]	236.0	[0..2]	[358..1]
PDIA1_CRIGR - Protein disulfide-isomerase OS=Cricetulus griseus GN=P4HB PE=2 SV=1	232.0	[0..10]	[358..5]
gi\|21703694 - gi\|21703694\|gb\|AAA49054.2\| cognin/prolyl-4-hydroxylase/protein disulfide isomerase [Gallus gallus]	232.0	[0..2]	[358..12]
PDIA1_BOVIN - Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1	229.0	[0..22]	[358..17]

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Predicted Domain #1

Region A:
Residues: [1-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFRIPTLFT LFLACFSLVS GVFGYSPMFG SNTIELNSKN FRKFVKAKGP SLVVFYAPWC  60
   61 GYCKKLVPTY QKLASNLHSL LPVTAVDCDA DQNRAVCSQY QVQGFPTIKL VYPSSKGSSL 120
  121 SSTDYNGDRS YKSLQKFVSD SIPSKVKILT SEAKTQKFIQ DAQNSSKVIL ISQKMKPTLL 180
  181 YKSLSNEFSS LPFSFMPAKA NVNDLFNISA YVDTSDLPIL FIKHPNNGTS FFSNSLNRDS 240
  241 IVEFLQSSIK DNNFSEYLAT FCSKKSCIIT IQDKDSDSGI DESIRKKYPK LHFVRLGRNT 300
  301 TVAERLEDTL DLGYSDTFLL SLKKSHYNAK PYGKPLRRWL EDIQVQQAGP SVSLPNDLLS 360
  361 KIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2b5eA
Description:	Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits