YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAPB1A11.03
Organism:	Schizosaccharomyces pombe
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAPB1A11.03.

Description	E-value	Query Range	Subject Range
GLO5_ARATH - Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1	319.0	[0..33]	[396..3]
gi\|34859262, gi\|... - gi\|34859262\|ref\|XP_230613.2\| PREDICTED: similar to Hydroxyacid oxidase 1 (HAOX1) (Glycolate oxidase)...	310.0	[0..31]	[406..3]
gi\|54043095 - gi\|54043095\|gb\|AAV28535.1\| glycolate oxidase [Brassica napus]	310.0	[0..33]	[396..3]
gi\|76661283 - gi\|76661283\|ref\|XP_613535.2\| PREDICTED: similar to hydroxyacid oxidase 1 [Bos taurus]	308.0	[0..30]	[406..2]
gi\|114680883 - gi\|114680883\|ref\|XP_001167611.1\| PREDICTED: hypothetical protein [Pan troglodytes] HAO1 - hydroxyacid oxidase (glycolate oxidase) 1	307.0	[0..31]	[406..3]
gi\|228403 - gi\|228403\|prf\|\|1803516A glycolate oxidase	307.0	[0..33]	[396..3]
gi\|109092849 - gi\|109092849\|ref\|XP_001116000.1\| PREDICTED: similar to hydroxyacid oxidase 1 [Macaca mulatta]	307.0	[0..31]	[406..3]

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Predicted Domain #1

Region A:
Residues: [1-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRNYNWFDA KEPISYESEI YAKGLKFQRP QITVDGRHWE QLAVERMTKD AAGYVYGCAG  60
   61 KRETYDKNME SFKKWSIIPN RLIKSGFPDL STTVFGQKYP FPIALAPVGV QKIFNPEGES 120
  121 GSCAAATREH IPYIISTASA TSFEDIEKAS GPGERWYQLY WPSNDHQDIT ISLLNRAKKT 180
  181 GCRVLIVTLD TFILGWRPSD MDNGYDPFLN PDSIGVEHGF SDPVFRKQFK EKHGVEVEEN 240
  241 MLEAAKEFAG IVFPGISHDW EDLKFLRKHW DGPIVLKGIM NVPDAKKAVE YGMQGIVVSN 300
  301 HGGRQQDGGV ASLTMLPKIV DAVGDKLDVL FDSGVRSGAD IAKALALGAK MVLIGRPYVY 360
  361 GLALEGSSGV SHVIRCLLGD LELTLHLSGI VSVKPKDLNR DVLYKEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.045757
Match:	2nzlA
Description:	No description for 2nzlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits