YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1703.13c
Organism:	Schizosaccharomyces pombe
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1703.13c.

Description	E-value	Query Range	Subject Range
SCMC1_RABIT - Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1	283.0	[0..6]	[305..177]
gi\|109465464, gi... - gi\|109467461\|ref\|XP_001072301.1\| PREDICTED: similar to calcium-binding transporter [Rattus norvegicu...	282.0	[0..6]	[305..186]
gi\|74215395 - gi\|74215395\|dbj\|BAE41903.1\| unnamed protein product [Mus musculus]	281.0	[0..6]	[305..177]
gi\|33598954 - gi\|33598954\|ref\|NP_037518.2\| solute carrier family 25 member 24 isoform 1 [Homo sapiens]	281.0	[0..6]	[305..177]
gi\|114674911 - gi\|114674911\|ref\|XP_524071.2\| PREDICTED: solute carrier family 25, member 23 [Pan troglodytes]	280.0	[0..10]	[305..353]

Back

Predicted Domain #1

Region A:
Residues: [1-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPLIPPAP PKKTLQLYTP QYYGLCTLGG LLACGTTHSA ITPLDLIKCR KQVNPNIYPG  60
   61 NIAGFKTILS KEGLRGLYTG GMPTLIGYSL QGCGKYGFYE LFKHKYSTLV GAQKAHEYRT 120
  121 SIYLAASASA ELLADIMLCP MEAIKVRVQT SNPRFANTTR EAWSKIVTNE GFGTLYRGLA 180
  181 PLWFRQIPYT MMKFASFERI VEALYTYIGK PKNMYSKAEK IGISFAGGYM AGVLCAIISH 240
  241 PADVMVSKLN SNKKAGEGAG AAAARIYKEI GFSGLWNGLG VRIVMIGTLT GAQWLIYDSF 300
  301 KIMCGFPATG A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits