YRC Public Data Repository - Protein Structure Prediction

Protein:	gwt1
Organism:	Schizosaccharomyces pombe
Length:	459 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gwt1.

Description	E-value	Query Range	Subject Range
GWT1_GIBZE - GPI-anchored wall transfer protein 1 OS=Gibberella zeae GN=GWT1 PE=3 SV=1 GWT1_GIBZE - GPI-anchored wall transfer protein 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / N...	492.0	[0..2]	[459..6]
GWT1_NEUCR - GPI-anchored wall transfer protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.... GWT1_NEUCR - GPI-anchored wall transfer protein 1 OS=Neurospora crassa GN=gwt-1 PE=3 SV=1	488.0	[0..2]	[459..10]
GWT1_CHAGB - GPI-anchored wall transfer protein 1 OS=Chaetomium globosum GN=GWT1 PE=3 SV=1 GWT1_CHAGB - GPI-anchored wall transfer protein 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 196...	484.0	[0..2]	[459..20]
GWT1_EMENI - GPI-anchored wall transfer protein 1 OS=Emericella nidulans GN=gwt1 PE=3 SV=1 GWT1_EMENI - GPI-anchored wall transfer protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.4...	477.0	[0..3]	[459..5]
PIGW_MOUSE - Phosphatidylinositol-glycan biosynthesis class W protein OS=Mus musculus GN=Pigw PE=2 SV=1	462.0	[0..1]	[458..1]
GWT1_ASPFU - (Q873N1) GPI-anchored wall transfer protein 1 (EC 2.3.-.-) (Inositol acyltransferase gwt1)	459.0	[0..3]	[457..5]
GWT1_ASPFU - GPI-anchored wall transfer protein 1 OS=Aspergillus fumigatus GN=gwt1 PE=3 SV=2 GWT1_ASPFU - GPI-anchored wall transfer protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101... gi\|159131609 - gi\|159131609\|gb\|EDP56722.1\| GPI anchor biosynthesis protein Gwt1, putative [Aspergillus fumigatus A1...	458.0	[0..3]	[457..5]
PIGW_RAT - Phosphatidylinositol-glycan biosynthesis class W protein OS=Rattus norvegicus GN=Pigw PE=1 SV=1	456.0	[0..1]	[458..1]
gi\|114197808, gi... - gi\|115492641\|ref\|XP_001210948.1\| GPI-anchored wall transfer protein 1 [Aspergillus terreus NIH2624],...	456.0	[0..2]	[459..4]
GWT1_ASPOR - GPI-anchored wall transfer protein 1 OS=Aspergillus oryzae GN=gwt1 PE=3 SV=1 gi\|238484309, gi... - gi\|238484309\|ref\|XP_002373393.1\| GPI anchor biosynthesis protein Gwt1, putative [Aspergillus flavus ... GWT1_ASPOR - GPI-anchored wall transfer protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=gwt1 PE=3...	454.0	[0..2]	[459..4]

Back

Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYKLEKEAF VSNLTGSSSI ETCGLLLIGI ACNVLWVNMT ARNILPKGNL GFLVEFFIFC  60
   61 LIPLFVIYVS SKVGVFTLCI ASFLPSFVLH VISPINWDVL RRKPGCCLTK KNENTFDRRI 120
  121 AGVTFYRSQM MLVTVTCILA VDFTLFPRRY AKVETWGTSL MDLGVGSFMF SSGTV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [176-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGRKNDIKKP NAFKNVLWNS FILLILGFAR MFLTKSINYQ EHVSEYGMHW NFFFTLGFMA  60
   61 LGVFFFRRSL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [246-459]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKVSYFNLAT FITLLHHCLL VLTPFQKWAL SAPRTNILAQ NREGIASLPG YIAIYFYGMY  60
   61 TGSVVLADRP LMYTRAESWK RFQRLLFPLC ILLVLYLVSN FLSVGVSRRL ANTPYVANVA 120
  121 FINMFFLTIY ILIDAYLFPS SVPYGSRVPK LLEDANNNGL LVFLIANVLT GVVNLSFDTL 180
  181 HSSNAKGLTI MTMYLFIICY MAHWLAQHGI RFRL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.366532
Match:	PF06423.3
Description:	No description for PF06423.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits