YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC725.10
Organism:	Schizosaccharomyces pombe
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC725.10.

Description	E-value	Query Range	Subject Range
gi\|47229726 - gi\|47229726\|emb\|CAG06922.1\| unnamed protein product [Tetraodon nigroviridis]	157.0	[0..19]	[160..126]
gi\|220944614, gi... - gi\|220954394\|gb\|ACL89740.1\| CG2789-PA [synthetic construct], gi\|220944614\|gb\|ACL84850.1\| CG2789-PA [... gi\|194189663, gi... - gi\|195575577\|ref\|XP_002077654.1\| GD23032 [Drosophila simulans], gi\|194189663\|gb\|EDX03239.1\| GD23032 ... CG2789-PA - This gene is referred to in FlyBase by the symbol Dmel\CG2789 (CG2789, FBgn0031263). It is a protein...	156.0	[0..18]	[160..16]
gi\|58380631, gi\|... - gi\|58380631\|ref\|XP_310673.2\| ENSANGP00000023128 [Anopheles gambiae str. PEST], gi\|55243380\|gb\|EAA065...	154.0	[0..12]	[162..9]
gi\|50760473 - gi\|50760473\|ref\|XP_418037.1\| PREDICTED: similar to Peripheral-type benzodiazepine receptor (PBR) (PK...	153.0	[0..19]	[160..199]
gi\|125985319, gi... - gi\|54644747\|gb\|EAL33487.1\| GA15462-PA [Drosophila pseudoobscura], gi\|125985319\|ref\|XP_001356423.1\| G...	152.0	[0..18]	[160..11]
TSPO - translocator protein (18kDa) gi\|123979620, gi... - gi\|60655037\|gb\|AAX32082.1\| benzodiazapine receptor [synthetic construct], gi\|60655035\|gb\|AAX32081.1\|...	151.0	[0..11]	[160..1]
gi\|109094434 - gi\|109094434\|ref\|XP_001108482.1\| PREDICTED: benzodiazapine receptor (peripheral) isoform 2 [Macaca m...	151.0	[0..11]	[160..1]
gi\|114686790, gi... - gi\|114686790\|ref\|XP_001171840.1\| PREDICTED: similar to peripheral benzodaizepine receptor - human is...	150.0	[0..11]	[160..1]
gi\|61371642, gi\|... - gi\|61371642\|gb\|AAX43705.1\| benzodiazapine receptor peripheral [synthetic construct], gi\|30584343\|gb\|...	150.0	[0..11]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNYQVFTS ISKNWWSASL VPVACGWFIG NSYKPRKDYE NKKQPKFHPP ASAFGPAWTL  60
   61 LYLTMGYASH LAYKADPLMI TNASRNGSIL YIAQLAANFA WMPLFYGLAK PKLALADLGI 120
  121 LTGLVGWLAK TWWPLAPTAS KWLIPYLAWL GYAGYLVSNV TN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.958607
Match:	PF03073.6
Description:	No description for PF03073.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits