| Protein: | nup40 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 371 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nup40.
| Description | E-value | Query Range |
Subject Range |
|
|
269.0 | [0..12] | [262..4] |
|
|
259.0 | [0..16] | [263..93] |
|
|
257.0 | [0..16] | [251..16] |
|
|
250.0 | [0..16] | [263..16] |
|
|
249.0 | [0..16] | [263..16] |
|
|
249.0 | [0..16] | [251..16] |
|
|
249.0 | [0..16] | [263..62] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MSFGGSGSIT NRSTLKPLSV DDLRSPSPQK EYRGFRTSVS NIPQEKKFVP SHLSHFGSSQ 60
61 QRRFAPEVSS PLAEPYESSS SFRLSLSSPP SSKFGGPSFG TPKPFLHTNR LGTGSLIEDA 120
121 PPTQSIYDFS SSRQINALNV GQSSSPF
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [148-272] |
1 11 21 31 41 51
| | | | | |
1 SPVSEKVYDP SFTMSGAPQD SNTSVIVFGF PPELTNQVIA EFSRFGTIIS ENSLTASSAG 60
61 FTPSKGPISG NWLQLTYAEP SSAAKAVLSN GMLINDSFMV GCIYSPAEAK EHVPKTLRNS 120
121 NKDLE
|
| Detection Method: | |
| Confidence: | 32.09691 |
| Match: | 1wwhA |
| Description: | Crystal structure of the MPPN domain of mouse Nup35 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [273-371] |
1 11 21 31 41 51
| | | | | |
1 MTDASSSETS MSIPVHADAH FQSQSGLGKK VIVQHKNDIF KSSQKHQPRN WLFHYLFGFG 60
61 STEPIDEEEK SKTASDNTSL QTSLFGKIVQ VVLHTLFGF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.454 | b.34.9 | Tudor/PWWP/MBT |
| View | Download | 0.454 | b.34.9 | Tudor/PWWP/MBT |
| View | Download | 0.356 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.282 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.282 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.279 | a.24.29 | Description not found. |
| View | Download | 0.243 | a.152.1 | Antioxidant defence protein AhpD |
