YRC Public Data Repository - Protein Structure Prediction

Protein:	atp14
Organism:	Schizosaccharomyces pombe
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp14.

Description	E-value	Query Range	Subject Range
gi\|42545641, gi\|... - gi\|46107176\|ref\|XP_380647.1\| hypothetical protein FG00471.1 [Gibberella zeae PH-1], gi\|42545641\|gb\|E...	114.0	[0..1]	[103..18]
ATP14 - Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily cons... ATP14_YEAST - ATP synthase subunit H, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AT...	107.0	[0..5]	[103..18]
gi\|39950808, gi\|... - gi\|39950808\|ref\|XP_363324.1\| hypothetical protein MG01250.4 [Magnaporthe grisea 70-15], gb\|EAA55599....	106.0	[0..1]	[102..17]
gi\|85117672 - gi\|85117672\|ref\|XP_965299.1\| hypothetical protein NCU03199 [Neurospora crassa OR74A] gi\|28927106, gi\|... - gi\|32420383\|ref\|XP_330635.1\| predicted protein [Neurospora crassa], gi\|28927106\|gb\|EAA36063.1\| conse...	100.0	[0..10]	[94..24]
gi\|116181540, gi... - gi\|88185695\|gb\|EAQ93163.1\| hypothetical protein CHGG_01398 [Chaetomium globosum CBS 148.51], gi\|1161...	97.0	[0..10]	[103..27]
gi\|40741815, gi\|... - gi\|67537514\|ref\|XP_662531.1\| hypothetical protein AN4927.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	90.0	[0..5]	[102..21]
gi\|114193339, gi... - gi\|115396262\|ref\|XP_001213770.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	83.0	[0..7]	[89..23]
gi\|240108301 - gi\|240108301\|gb\|EER26475.1\| hypothetical protein CPC735_006470 [Coccidioides posadasii C735 delta SO... gi\|90302971, gi\|... - gi\|90302971\|gb\|EAS32602.1\| hypothetical protein CIMG_03626 [Coccidioides immitis RS], gi\|119187157\|r...	80.0	[0..1]	[102..16]
gi\|159127569 - gi\|159127569\|gb\|EDP52684.1\| mitochondrial F1F0 ATP synthase subunit Atp14, putative [Aspergillus fum... gi\|70999678, gi\|... - gi\|70999678\|ref\|XP_754556.1\| mitochondrial F1F0 ATP synthase subunit Atp14 [Aspergillus fumigatus Af...	79.0	[0..7]	[79..22]
gi\|83767630 - gi\|83767630\|dbj\|BAE57769.1\| unnamed protein product [Aspergillus oryzae] gi\|169770603 - gi\|169770603\|ref\|XP_001819771.1\| hypothetical protein [Aspergillus oryzae RIB40]	79.0	[0..7]	[79..22]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRILKSLSR SYSTTSPRLY VDVVQGLYIS SLKSYKPKAV PSETAAEVKE WSMPSAPTAP  60
   61 KYDVDFTSAL NSYKYEGETI PTKAAGESNK FDFLESYENE KEH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.485	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.393	a.144.1	PABC (PABP) domain
View	Download	0.357	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.344	a.24.17	Group V grass pollen allergen
View	Download	0.331	a.144.1	PABC (PABP) domain
View	Download	0.324	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.310	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.304	d.58.48	MTH1187-like
View	Download	0.303	d.58.48	MTH1187-like
View	Download	0.289	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits