YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1620.06c
Organism:	Schizosaccharomyces pombe
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1620.06c.

Description	E-value	Query Range	Subject Range
gi\|68372393, gi\|... - gi\|68372393\|ref\|XP_685452.1\| PREDICTED: similar to Ribose-phosphate pyrophosphokinase I -like isofor...	370.0	[0..5]	[320..3]
gi\|224098594 - gi\|224098594\|ref\|XP_002187809.1\| PREDICTED: similar to phosphoribosyl pyrophosphate synthetase 1 iso... gi\|50745642 - gi\|50745642\|ref\|XP_420181.1\| PREDICTED: hypothetical protein [Gallus gallus] gi\|542151400\|ref... - PREDICTED: ribose-phosphate pyrophosphokinase 1 isoform X2 [Zonotrichia albicollis]	369.0	[0..5]	[320..3]
gi\|28422233 - gi\|28422233\|gb\|AAH44286.1\| Prps1 protein [Xenopus laevis]	369.0	[0..5]	[320..11]
gi\|38511773, gi\|... - gi\|45361007\|ref\|NP_989140.1\| similar to phosphoribosyl pyrophosphate synthetase 1 [Xenopus (Silurana...	368.0	[0..5]	[320..3]
gi\|33303737 - gi\|33303737\|gb\|AAQ02382.1\| phosphoribosyl pyrophosphate synthetase 1 [synthetic construct]	368.0	[0..5]	[320..3]
gi\|62897899 - gi\|62897899\|dbj\|BAD96889.1\| phosphoribosyl pyrophosphate synthetase 1 variant [Homo sapiens]	368.0	[0..5]	[320..3]
gi\|57527447, gi\|... - gi\|57527447\|ref\|NP_001009694.1\| ribose-phosphate pyrophosphokinase I -like [Rattus norvegicus], gi\|5...	367.0	[0..5]	[320..3]
gi\|22295271, gi\|... - gi\|22299089\|ref\|NP_682336.1\| ribose-phosphate pyrophosphokinase [Thermosynechococcus elongatus BP-1]...	367.0	[0..2]	[317..84]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNSIKIFA GNSHPELAEK VARRIGLSLG KVAVVQYSNR ETSVTIGESV RDEDVFILQT  60
   61 GCGSINDHLM ELLIMINACR SASARRITAI IPCFPYARQD KKDKSRAPIT ARLVANMLQT 120
  121 AGCNHIITMD LHASQIQGFF NVPVDNLYAE PSVLRYIREN IDTTVNPTVI VSPDAGGAKR 180
  181 ATALADRLDL DFALIHKERQ KANEVSRMVL VGDVRDKLAI LVDDMADTCG TLGLAAKTLK 240
  241 DNGAKAVYAI VTHGILSGKA IKVINESALE KVIVTNTIPH DDKRSLCSKI ETIDISGVLA 300
  301 ECIRRIHHGE SVSVLFSVAP A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2h06A
Description:	No description for 2h06A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits