YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC31G5.02
Organism:	Schizosaccharomyces pombe
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC31G5.02.

Description	E-value	Query Range	Subject Range
ROT1 - Molecular chaperone involved in protein folding in the ER; mutation causes defects in cell wall synt... ROT1_YEAST - Protein ROT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ROT1 PE=1 SV=1 gi\|190408426 - gi\|190408426\|gb\|EDV11691.1\| membrane protein [Saccharomyces cerevisiae RM11-1a]	339.0	[0..24]	[229..25]
ROT1_ASHGO - Protein ROT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ROT1 P... ROT1_ASHGO - Protein ROT1 OS=Ashbya gossypii GN=ROT1 PE=3 SV=1	323.0	[0..28]	[231..27]
ROT1_CANAL - Protein ROT1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ROT1 PE=3 SV=1 ROT1_CANAL - Protein ROT1 OS=Candida albicans GN=ROT1 PE=3 SV=1 gi\|238879422 - gi\|238879422\|gb\|EEQ43060.1\| conserved hypothetical protein [Candida albicans WO-1]	316.0	[0..5]	[230..6]
ROT1_EMENI - Protein rot1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=... ROT1_EMENI - Protein rot1 OS=Emericella nidulans GN=rot1 PE=3 SV=1	311.0	[0..1]	[229..1]
ROT1_CANGA - Protein ROT1 OS=Candida glabrata GN=ROT1 PE=3 SV=1 ROT1_CANGA - Protein ROT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=...	294.0	[0..8]	[229..5]
ROT1_DEBHA - Protein ROT1 OS=Debaryomyces hansenii GN=ROT1 PE=3 SV=1 ROT1_DEBHA - Protein ROT1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968...	289.0	[0..7]	[230..1]
ROT1_KLULA - Protein ROT1 OS=Kluyveromyces lactis GN=ROT1 PE=3 SV=1 ROT1_KLULA - Protein ROT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1...	283.0	[0..7]	[230..3]
ROT1_YARLI - Protein ROT1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ROT1 PE=3 SV=1 ROT1_YARLI - Protein ROT1 OS=Yarrowia lipolytica GN=ROT1 PE=3 SV=1	278.0	[0..27]	[231..28]

Back

Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLLYQIGLF TCLWLTQYVG AEIDNYDENL VGTWSSKSET VLTGPDFFDP LDEDFFEPEL  60
   61 PGISYSFTDD GFFEEAIYII KSNATKPQCP KGFLQWQHGT YAINDTGTLV LTPFVGDGRQ 120
  121 LESDPCTSNF SVYTRYDQVE TMEKYEISMD RYHGRYKLEL YEWDGTPKQP MFLAYRPPKM 180
  181 LPTSTIAVNT IQTAAKRWTA PLVPLAQKHT NTIWWVGLGL IAIGSIGYLV VS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits