YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16A3.16
Organism:	Schizosaccharomyces pombe
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16A3.16.

Description	E-value	Query Range	Subject Range
gi\|42549579, gi\|... - gi\|46128695\|ref\|XP_388901.1\| hypothetical protein FG08725.1 [Gibberella zeae PH-1], gi\|42549579\|gb\|E...	113.0	[0..1]	[65..355]
gi\|85113366 - gi\|85113366\|ref\|XP_964508.1\| hypothetical protein NCU02149 [Neurospora crassa OR74A] gi\|28926293, gi\|... - gi\|32417722\|ref\|XP_329339.1\| hypothetical protein [Neurospora crassa], gi\|28926293\|gb\|EAA35272.1\| co...	100.0	[0..1]	[65..1]
gi\|119183622, gi... - gi\|90301609\|gb\|EAS31240.1\| hypothetical protein CIMG_06719 [Coccidioides immitis RS], gi\|119183622\|r...	98.0	[0..1]	[76..1]
gi\|116193377, gi... - gi\|88182319\|gb\|EAQ89787.1\| hypothetical protein CHGG_06406 [Chaetomium globosum CBS 148.51], gi\|1161...	97.0	[0..1]	[65..1]
gi\|86196300, gi\|... - gi\|86196300\|gb\|EAQ70938.1\| hypothetical protein MGCH7_ch7g345 [Magnaporthe grisea 70-15], gi\|3997031...	96.0	[0..1]	[65..1]
gi\|49070444, gi\|... - gi\|71006756\|ref\|XP_758043.1\| hypothetical protein UM01896.1 [Ustilago maydis 521], ref\|XP_399511.1\| ...	95.0	[0..1]	[65..1]
gi\|169780660 - gi\|169780660\|ref\|XP_001824794.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83773534 - gi\|83773534\|dbj\|BAE63661.1\| unnamed protein product [Aspergillus oryzae] gi\|238505150, gi... - gi\|238505150\|ref\|XP_002383804.1\| cytochrome c oxidase assembly protein (Pet191), putative [Aspergill...	94.0	[0..1]	[65..1]
gi\|49647783 - gi\|49647783\|emb\|CAG82236.1\| YALI0C16731p [Yarrowia lipolytica] gi\|50548891, gi\|... - gi\|50548891\|ref\|XP_501916.1\| YALI0C16731p [Yarrowia lipolytica], gi\|49647783\|emb\|CAG82236.1\| YALI0C1...	92.0	[0..1]	[78..1]
gi\|111068823, gi... - gi\|169600735\|ref\|XP_001793790.1\| hypothetical protein SNOG_03212 [Phaeosphaeria nodorum SN15], gi\|11...	91.0	[0..1]	[65..1]
gi\|44983485 - gi\|44983485\|gb\|AAS52621.1\| AEL064Cp [Ashbya gossypii ATCC 10895] gi\|45190543, gi\|... - gi\|45190543\|ref\|NP_984797.1\| AEL064Cp [Ashbya gossypii ATCC 10895], gi\|44983485\|gb\|AAS52621.1\| AEL06...	91.0	[0..1]	[65..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSCKVIRE DLANCLLHSD CMFVKKKSAR ECLKNKDELP EECKNLIEAY GECKRQMLDM  60
   61 TKRYRIAPEK NTDQDTEKPS NVDEQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.817	a.278.1	Description not found.
View	Download	0.503	a.28.1	ACP-like
View	Download	0.492	f.14.1	Voltage-gated potassium channels
View	Download	0.492	f.14.1	Voltage-gated potassium channels
View	Download	0.482	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.469	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.434	c.3.1	FAD/NAD(P)-binding domain
View	Download	0.393	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain
View	Download	0.356	c.3.1	FAD/NAD(P)-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits